RNA id: TU171279



Basic Information


Item Value
RNA id TU171279
length 1061
RNA type TUCP
GC content 0.55
exon number 2
gene id G136296
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16963330 ~ 17000089 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGAGGGCATTAGGATCTCATCctgtttattaacaaaaaaaaaaatgacagacaGGAACAGCATCGGAGtagttcaaaataaaaacagagcaaATATTACAAAGTGGCTGCGGTGCAACGGTCTATACAGCTCTTCGGCTTTCCGGGAAGGTTTTTCCGTTTTCATTCTTATCAGTAGTTGGAATGTAAAGAGAACTGTGCAAAGAATTGCAGGGGTGGATGAGCATCTTTGGACTTAAGACTTTGGGAAcatcagggggaaaaaaaacaaacagcaatacaGCTCGAGCGACCTGTGTAAGAAAGGGCAGTCTGAAGCGGACGCCGCCTCCTGGGCTTTCCAGACGGAGGcagatgtctctctctctctccatgcgGCACTGCGGTCTCAATGACATTGACTCAGGACCTCCTGCATCTTGGCTTGGATGTCCACCACCCTCTGGGTCCACTTGCACTTCACGTCGTCCTCGTCGTCCTCGATGACGGCGGTGTAGGCCATGAGCGAGATGAGCCCGATGTGGAACAGGTTGGTCAGGTGGGAGCACCTCTGCTCCATGACCTTGATGTTGCCGTCGCAGTGCTCCATGTAGACCTTCAGCAGAGGCCTCCCGAAGGCCCGGCGCGTCCCCATCACCCCGTAGTAGAACACGTCCAGGCTCAGCTCGCCCTTGTCTCTCTCGTACGTGTCCTGGAAGTCCTGCAAGTGGCTCTCCTTGTGTTCCGGGTCGGTCTTCACCATTTCTACCATGCTGCTGAAGGCCTGGTACTGGTGTTTGAGGTACTCCTCGTACTTGGAGAAGGTCTCGTGGATCTCGTCGATGCGTATCTGCTTCAGGGTCTGCCTGTTCTGCTGCGAGATGCTCTCCAGCTTGGTGTGGACCGTCTGGAACTCCTCCTCCAGGGCGTTGGCCTCCTCGTCGTAGACGCCCTTCCGCACGACGGCCACCAGGGAGGTGACGATGCCAAAGAGGGGGTCGATGGAGGTGGCGAAGGAGGAGACTTTCTCCACGCAAGACAGCACCTTGGCGGCCGTCTTCCTGATGTTCTCGGCCTCCTCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU171280 lncRNA upstream 6035 16956689 ~ 16957295 (+) True G136297
TU171268 lncRNA upstream 48635 16912235 ~ 16914695 (+) True G136286
TU171211 lncRNA upstream 56225 16842567 ~ 16907105 (+) True G136237
TU171209 lncRNA upstream 131528 16829050 ~ 16831802 (+) True G136236
TU171207 lncRNA upstream 198222 16759853 ~ 16765108 (+) True AMCG00012351
TU171337 lncRNA downstream 127066 17127155 ~ 17209359 (+) False G136341
TU171352 lncRNA downstream 164887 17164976 ~ 17172106 (+) True G136351
TU171462 lncRNA downstream 290056 17290145 ~ 17290529 (+) True G136436
TU171471 lncRNA downstream 300438 17300527 ~ 17304999 (+) True G136444
TU171485 lncRNA downstream 330705 17330794 ~ 17332570 (+) True G136457
AMCG00012360 mRNA upstream 62895 16877377 ~ 16900435 (+) True AMCG00012360
AMCG00012354 mRNA upstream 144891 16812785 ~ 16818439 (+) True AMCG00012354
AMCG00012351 mRNA upstream 198540 16733426 ~ 16764790 (+) False AMCG00012351
AMCG00012350 mRNA upstream 247355 16713346 ~ 16715975 (+) True AMCG00012350
AMCG00012349 mRNA upstream 257137 16690822 ~ 16706193 (+) True AMCG00012349
AMCG00012367 mRNA downstream 22570 17022659 ~ 17029088 (+) True AMCG00012367
AMCG00012370 mRNA downstream 42106 17042195 ~ 17051046 (+) True AMCG00012370
AMCG00012368 mRNA downstream 56441 17056530 ~ 17063053 (+) True AMCG00012368
AMCG00012374 mRNA downstream 127723 17127812 ~ 17129154 (+) False AMCG00012374
AMCG00012375 mRNA downstream 132473 17132562 ~ 17133006 (+) True AMCG00012375
TU171236 other upstream 87730 16871838 ~ 16875600 (+) True G136258
TU171233 other upstream 95882 16866537 ~ 16867448 (+) True G136255
TU171221 other upstream 99737 16811706 ~ 16863593 (+) True G136245
TU171182 other upstream 265939 16674279 ~ 16697391 (+) False AMCG00012349
TU171165 other upstream 314768 16643757 ~ 16648562 (+) True AMCG00012348
TU171327 other downstream 125924 17126013 ~ 17129339 (+) True AMCG00012374
TU171339 other downstream 129685 17129774 ~ 17214883 (+) False G136341
TU171331 other downstream 129891 17129980 ~ 17134830 (+) True G136341
TU171333 other downstream 231287 17231376 ~ 17234949 (+) False G136341
TU171338 other downstream 231287 17231376 ~ 17264404 (+) False G136341

Expression Profile