RNA id: TCONS_00009310


Basic Information

Item Value
RNA id TCONS_00009310
length 5714
RNA type mRNA
GC content 0.36
exon number 8
gene id XLOC_004699
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 22576404 ~ 22618080 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTTGTGCAAatatgatttgttttttgttcagaAATCTTTGATATGTATTTCATATGGCACATTTTTCTTCTCACTAGCTGACATACAGCTTTTTTGCTCTACTATATTTAAcacaacatattaataaaaataaaaaaaaccctgaatGCCAGCCTCATCTTTTATagaaaaaaacctttaaaaaagagctaaaaacctgtcatgctaaaatcatgtCATTTAATTTCTAGAGTGATGGCATCTCCATTGCAACTCCTCTTGCTAATTGTCAACAGCGCTATCAGTTCAAGACTTTTGTTATCTGACTGGCATATATAATTGATTGCTATATAATATAATTGCAGGGGAGATTACTGAAAGCTACCCGTATGCATTTTTTATTACTCTATTGAATTGAAAAATCAGTTCGGATAAAAGTACAAAGAAATGTATCTAAAAATTGCTTCCGATAATTGTTCATTAGTTCACTCTTCTGATTCCCTCATCCATTTAATAGGGCATTCAACAGCGTGGTACTCTAGAAACAGGGATGGGAAACGTTTCAAATCATTTCAAAGGCATTTGCATTAGCCATTCACCTTTTTACCATCTCATCTTTGTTCCTCCAGAATGCAACCATTTCAGGCGGCTCCAGGACAGTTTGGCGATGAGGTTCGTCAGCCAGGACTTTATTGCTGGAGAGTGGAGAAAATGAAGGCTGTTCCTCTGAATCAAGCTGAAGTGGGGGCTTTCTTCAACGGAGACTCATACCTGGTGCTGGATAACAGGGGAGATCAGGGAGCAGACCTACACATGTGGATCGGAGAGAAATCGTCGCGTGACGAGCAGGTGGCTTGCGCCATGTTGGCCACACAACTGGATAATTTCCTGGGTGGAGATCCAGTCCAGCACAGGCAGGTTCAGGGTTACGAGTCTCCAGAATTCATGAAACTCTTCCCTCGAGGAGTCAGTTATAAGGAGGGAGGAGTGGAGTCTGGCTTCAGAAGAGCGCAGTCTGGACCTGGACCTGTTCAGAGGTTATACCAAATCAAAGGGAAACGCAACATCAGGGCAAAGGAAGTAGATTTGAGCTGGCAGAGTTTTAACAAGGGCGACTGCTTCATACTTGATCTGGGCGAgACGATTGTGTCATGGATTGGATCTCAGGCAAACATCTTCGAGAAGCAGAAGGTGAGAGAGATCGCCTCTCTCATCAGAGATACAGACAGACACGGCAAAGCTCAGATCACCAATGTTAATGAGGGAGAGGAGACACAGGAAATGCTGAAGGTTCTTGGTCCAGTGCCAGAGCTGAAAGAAAGCACTCCAGAGGAGGACAGCAAAGCAGATGCATCAAATTCAGCCTCCCTTTACAAGGTTTCAGATGCCACAGGGTCAATGAAGTTGACCAAGGTGTCAGAGAAAAGTCCATTTGCCAAGGACTTGCTGGTGCGTGATGACTGCTTTATCCTGGACAATGGGGCCAACGGAAAAATCTTTGTTTGGAAAGGAAGTGGAGCCAACGCAGAAGAGAAGAGGGTTGCTTTAAAAATGGCAGATGACTTCATCCAGCAAATGAATTACCCAAAGATGAAAACACAGGTGGAGATTTTACCACAGGGCAGAGAAACTGTTATCTTTAAACAGTTTTTCCAAAGCTGGAATTAAACCTCATTTCACTGCATGATCAGATAATAAACTGCACTCAACCAGTTGTCAAAAAACTGTAATTTACTTCAATAAGGCCATTGATATATTGCGTAATAAACAAATGTACAGTTGTAAAACAAATCATTCATGGAGGTTTGCAGTAATAATGGATATGAGTAAGAGAGGCTTTACTATTTGTTTGGTACCGCGTTTGTACGGCTTTTAGAGGGTGTTTATATTGGTCAATGCTAATTTTAAAgagcttttaataataatttcccCCTTTTTTGATTGAGAGGGTCAAATCTACTGTTATGTTGCAGGCTTAATGAACGCAAACCCTTGAGTAGATGCCATTTCTACTTAAAAACAGAATAATGTAACCACTTTCAAGCCAATTTACTATTTCACAATCTCTGTGAAATggctttttttctcattttgtaCTCATTTTGTGTATGTAACTGCAGCATggaaattaaaatgcaaatgcaacaacagcaaaaacacTGTTTCTCAGGTGTGAAGTCGTGCTAATGGGCTGGAATTCCCTTTATGGCTGATAAGATGACAGCAAAGTTATGTAAGCGCCGTTAAGGGTCATTAGCATTCAGGGCATGTTACCATGGTTTACATTAACTCATATCAACTCTTACAAGGATTAACAGCTTAACAACTGAGGATTTAAGCAGATAAACACATATACTCTACATAAATGTTGGTTTATCattacccaacattgggtcaaatatggccAAATCCTATTTGTTGAGTTAAAATGagaaattttaataatttgaaaaaatGAACCCAACATTGGGTGTGTCATTATTTGCCCCAATGTTGGGTTATGACAACACAGTATTTCTACTATATAAGTGAAACCTTCTGTCTACTGAGAATTTTGAaatattgaattgagatctgcaAAGCttggttcatttatttatttctattcattTTCTCTTTTATGAATCTGAACTTTGGATTTGGAGGAGGTAGAACACAGTTATCACATGGTTTCAGAAAATGTTcacctactttttttttcttgtagctGATGTTTGCTGTGTGATTACAGTGTGAAACTTTGGGTGTGACAAGCAAATTTGCAGCTATACATTCACTTTCAGTTAAAGTAATTAACCTGAATTCCTATGTAGTTTGTGGAACTTAAACTGGAATGTTAGGAAAAGGATTTTACGTAATTGCAATTCAAATTACATCATCTTAAAGTAACTAttattaactatatttttattttattttgaccaaAAATCAACATGTAGGCAAGAAAAGAGGATCTGAGGGTCTCAGTTGAGGATGGCGATGGTTCTTTCAAGTATTTTAAGACAAGTATCATCAATATTGAtactacaattattattttatagtattttatgttttttaatcaccatcagtattattaataaagaaaatacaaCAGACAtaatttctttttacatttattaaaattagagAACACTATTAATTACACAACAAATGGCTATATAAAAccatataaaactaaatattacacATCGCACAAAccttgtttcattttttaaaattacatttaatcccattaacatttttatttaatgaaacaaATGGCTGCTGACTCTCCTTTTGAGCCTGTTATTCTTTGACTGATCAGTGGTGTACTGTTTTGTGACAAGTGTCACACAGCCTGTCATTATTAACTGGAGCAAAATAACTCCAGATTAAGCATCTTTTTCGTTCAGTCATGATGACTCCATGCTCAAGTTGAAAACCTGctgctttgtgtgtgtgctgtgcacTATGTTTTGAAAGGGTGTAGCTGTGAGCAAAccttattttttacagtctatggagtAAAACTGACCCATTAACAGAGATACAGCCGAGTAATGTTATAGTTCTCATTCCAGTTCttattaaagtaaatatttattaagatattcTAAAATCAGCAAccatttatttaagaaaaataaaacgtATAAAGGATCGATATAGaaggaataaaaaatattttcacgtATGGAAAATATCGATACTTAAGGATCGATCTACCCAGCCCTAAATtagcagcagaaaaaaataaataaatataaaggtaATCCAGAAGGTAAGCATCAAAGTAACTGCTTGATATGCAAACCCAAATGAAAGAACCAAACTAAGGGCTTAAATACACGAGTAAATAAGAAAGCAAGCCAAATACATGTGAACACAGTTAACTAATGAGTGTAGCCATAGAAACAGCTAGCAAAGGAAATATTAAGTATAAGAGATTTTACATCATTTGTTCCTTTCTAATTCTGTTTTTCACAAAGTGCCTTGGTTTTTTGTTGAAGTGCCTTGGTTGTTTAGTAAAACACTGTTCTAATAGCATGGGACTTAAAATTTTGAAAGAAGGTTACGGTTTTTCTGAAAAAAGCAAGTGTTCAtaaattgttctctaattttaATCTCCACTATGTAAAACAAGAACACAAAATGTCCATAACACTTCAGTTTTAAAAATTTTGTCTCGTTTAAATTTTCTGTTTCAAGTTAGCGGTTTGCTACCTCAGTTAACATTCCCCGTTTTATTGGACAAtaaagttttttatgttttatttgtaatgaAATCATTTTAGGTCAACATGTAAAACTACATACTGCTGGGTGCCAGAAGACTATAAggaaatttttttaaagatttaatacaAGCTTGAATATTAAATATAGATTCCTGCTCTTTCTTTCTCATCACTATGGAGTTTCAGGGTGTGAAGCAGCATTATGTTACTGGGATAAAGTTCATGCCAACAACTGTTGCTTAGGCAATGTGAGTAATCATCACTGTCCCCAAAAAGGTCAAACCAGTGATTAACACTACGTGTCATAAGCAACTTATTtcaaatacagctgaagtcagaattattagcccccctgtttattttttccccaatttctgtttaacggagagacgatttcttcaacacatcactaaacataatagttttaataactcatctctaataactgatttattttatctttgccatgatgacagtaaataatatttcactagatattttcaggacacttctatacagcttaaagtgacatgtaaaggcttaactaggttaattgggttaactaggcaggttagggtaattaggcgagttattgtataaccatggtttattctgtagactatggaaaaaacatagcttaaagaggctaatgattttgaccttaaaagagtttttttaaaaattaaaactgcttttattccaggtaaaataaaacaaataagactttccccagaaaaaaaaaatatcatcagacatactgtgaaaatttccttgccttgttaaacataatttgggaaatatttaaaaaagaaaaaaaaattaaaaggggggctaataattttgacttcaactgtaagtccAAGGAAATCACACAGGATCTTCCTTTtggcttttcttgatttttatgtaatgtaatgtaagcAACCGCTTCAGTTCACTGGAATTTATAATCGTGCTTTTATAATCCTCCTCAGCTTTACTTTTGGATAGTTACATAACCTGTTAACAGTCATATAACCATACATATTTTATATCTGATGACTATAAAATCATCAAGAGAATGGATGCTCAcaaatttgaaatatttgtatataaagcCTGGGTAAATACTGTCTGACATCGTATTTCAGACAATATCGCTAAGTGAGTGTTCAATGAATCAGTAAATGAACAAGTGGCATGATATGGGACAGTATTAACTGCCTGATTCCTGGCATCATGCCATTTTGACTACTGTCTGAATCATTGCTGGGAAAGACCATATCTCATCACGTAGCTTTTTCCTCAGCCTTCGCCTCACACCGTCATGACTGTAAAAACTGAGGTCCAAAGTTCAGAGTATGCAGGAGACGAGGTAAAACACGGGCTGAGAGAGCGCTagccttcagtctcagcagacaCCTCGAGCTGCGTTCACCTGCTCCCCAACACCTCACCATGGGTAAGTCACAGAGGATTTACATGCAGAGATTTGTGCTGGAAAATCAGGGAAATGCAGGAAAAGAAAATTTAT

Function

GO:

id name namespace
GO:0051016 barbed-end actin filament capping biological_process
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8541 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament severing and actin polymerization or depolymerization. Predicted to act upstream of or within barbed-end actin filament capping. Predicted to be located in several cellular components, including lamellipodium; melanosome; and ruffle. Orthologous to human CAPG (capping actin protein, gelsolin like).

Ensembl:

ensembl_id ENSDART00000184862

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009303 lncRNA upstream 161868 22423953 ~ 22427055 (+) False XLOC_004697
TCONS_00010927 lncRNA upstream 284082 22289980 ~ 22304841 (+) True XLOC_004696
TCONS_00010734 lncRNA upstream 329525 22258962 ~ 22259398 (+) False XLOC_004696
TCONS_00010926 lncRNA upstream 569153 22017946 ~ 22019770 (+) True XLOC_004695
TCONS_00010925 lncRNA upstream 789527 21790979 ~ 21799396 (+) False XLOC_004694
TCONS_00010735 lncRNA downstream 10501 22618388 ~ 22619122 (+) True XLOC_004701
TCONS_00010928 lncRNA downstream 429560 23037447 ~ 23040091 (+) True XLOC_004707
TCONS_00010929 lncRNA downstream 846542 23454429 ~ 23605722 (+) False XLOC_004711
TCONS_00010930 lncRNA downstream 846571 23454458 ~ 23605722 (+) False XLOC_004711
TCONS_00010931 lncRNA downstream 846641 23454528 ~ 23469341 (+) False XLOC_004711
TCONS_00009305 mRNA upstream 15626 22560067 ~ 22573297 (+) True XLOC_004698
TCONS_00009301 mRNA upstream 143862 22404108 ~ 22445061 (+) False XLOC_004697
TCONS_00009302 mRNA upstream 144536 22407852 ~ 22444387 (+) False XLOC_004697
TCONS_00009300 mRNA upstream 284082 22258962 ~ 22304841 (+) False XLOC_004696
TCONS_00009298 mRNA upstream 840915 21697540 ~ 21748008 (+) True XLOC_004693
TCONS_00009312 mRNA downstream 20817 22628704 ~ 22645215 (+) True XLOC_004702
TCONS_00009314 mRNA downstream 50038 22657925 ~ 22664563 (+) True XLOC_004703
TCONS_00009315 mRNA downstream 64436 22672323 ~ 22678549 (+) False XLOC_004704
TCONS_00009316 mRNA downstream 64438 22672325 ~ 22678549 (+) False XLOC_004704
TCONS_00009317 mRNA downstream 66143 22674030 ~ 22678551 (+) False XLOC_004704
TCONS_00009307 other upstream 10393 22578404 ~ 22578530 (+) True XLOC_004700
TCONS_00009304 other upstream 144151 22443629 ~ 22444772 (+) True XLOC_004697
TCONS_00009299 other upstream 794807 21794002 ~ 21794116 (+) True XLOC_004694
TCONS_00009295 other upstream 1151465 21437346 ~ 21437458 (+) True XLOC_004691
TCONS_00009286 other upstream 1896910 20691358 ~ 20692013 (+) False XLOC_004688
TCONS_00009313 other downstream 50036 22657923 ~ 22661380 (+) False XLOC_004703
TCONS_00009319 other downstream 70066 22677953 ~ 22745783 (+) False XLOC_004704
TCONS_00009330 other downstream 313590 22921477 ~ 22932021 (+) False XLOC_004706
TCONS_00009332 other downstream 502276 23110163 ~ 23110277 (+) True XLOC_004708
TCONS_00009336 other downstream 969379 23577266 ~ 23577391 (+) True XLOC_004712

Expression Profile

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