RNA id: TCONS_00010931


Basic Information

Item Value
RNA id TCONS_00010931
length 3240
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id XLOC_004711
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 23454429 ~ 23605722 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGGCTGAATCGTGTTTTTGAACTGGATTATTAAGGGGTGCCTTTAGAATCTGTTTGCGCAAACGCACCTTACTTTCGGTCGTTATTGTCAGTTGACAGTCAAATTACTCATTACATCTGTTAACTAAAATATGCTTTTATAGAGGACTAAATCCCCTTTGGTGAACGCCTAATTTTTGAATCATAAGATTCGGTTCTTTTTGGAATCGACTCCGAGCCCAGCTGGCACATGTTTATGCGATTTTGTCACAGCTGGGTCGAAGAGATGTGCTCCTAAACTgcTCGAGAGACAGTCCAGACGAAATTTCTAAAATCTTCATGAAGAACGTGACATCATTTTGGATGGCCTAAGGTGCATGGAATTTTGACTCACAAACATTCACACGGAAGATCATTACGATGCTCTAAATTTGAAAAAAGGACAAATAACATAACAACCTACACTCAAGGAAAACATATGTATAACTGTGGTGAATTATTTACTTCTTGTAAATTTCATgaccatttaaaatttaaatattgagTGGGTGATACTAAAAAGTTTTTGTAATGTTCTCAAGAAAGATTGCAACTGTTTTAACATTTTACTTCGTTGCTTCATGTAAAGATTGTGACAGATTTGTCATAAAATATCGAACTAATGAATGTATTACATGGCCTAATTTCTTTGAAGGGTTTAGGGCACAGGGTCGAGCCCTTCCAAATAGAAAGCAGTGTGCAACACCAAACAACTTCCCTGTGTAAAGGATTGTGAAATCCTTCATTCTGAAGTGCCCTTTGGAGGGTGCTATATCCTGTGTTGAACCAAAGTCATTTCAatctgcggccatctttgaaaggtctctcgggcagtatgctcagacATTCTATCTCAATGGGGAAACTTAAAATTCTCCAAACCAGTTtaccaagcttacgattacatatttagaatcaccaataaaattaaacaactactgtctcataagttttgtttttaaacgttcgaatcaaacaaaatcagcattttttcaggttgcttgagctaatgtacatgcacactcgaaaggaacgagatcatGTCACAAACCTCAATTATGGCAttgttacacattatcatccccTGAATAATGCTCGTCAGATCACGCTGTTCTTCAGAaataattcacaacttggtcttgatggcaaatGTCCTTCCGAAAACCGAATCTTTGTTTACAGTTTGTGGGAGTTTGAGTAACTGCTGTCAAGTGATATGCATTTGACAGTATGGACTGTACCTTGtgttcgtttcatacagattacaaaacaaaaacttttgtttttgactgtagtgggttcattttaaattacagatttacaatcTTTATGTGAATATATATCTTATATCTGTGAAGCAAGtgttcgctgagattccagtgtgtttgttgaccacaaaaactgttgtaaaagcacacgtctggtctgaACTTCTCTTCTGAAGAAACATCAGTCTATAATCATTGATGATTGGCTACTGTTCTAGTAGACTGGGCTTTATTTGCcgtattgaccgttacacttttctccattcaaacttcatgagtgacatgtcttgtgtattgtaGTCTTTAGTAAAATGTTTCACTGGACTTAAGGTGTCTTTATGTCATATCATAATATAACATAGCAAGGGAGTGGTGCAGTTATGCAGACTGATGCTTATAGTCAGAGGTGAACTTAAAAATTGTTATGTTTACATCTACACTAATCCAGATacattgaaaaaatgtttttttattctataaacGCAGAATAATTTtcaactccttttttttttttttttaaaaaggtcatCCACACTAAAACAACTGAAAACTCTTTGGTTCATGTATTAAGATGAGAcacttttatatacttttttttatataaaataaaacagcttcaatattgtatattttattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattagataagACATGAAGCTTTTACCTATTTACTTACTGTCTCTTTAAAACATTGTGACAATGTTTAGTTGTCTTTTGATGAGAGGCAATATGGAGCATGTACAAACAGACATTAATCTTCAATAAAGCTAAAAGTAAAGCTAAAATCcactgtaaaatctaaaaaccactgtttacagtgttTGATATTTTTACTCTGGAATATTACTATACTTTGATACATTTTGATTTATCGGTTACttcttgtgtatgttaacaaataaatgcaaatgtattataattcctaaaattatattatagttcctaaaaatgtgGGTTGTGGCATGATGACCATatgaaaatgtgggtcccatggccaaaccagttgagaaccactgatctagaggcctttatctttcatataagccacttctgatacaaaGTGATcacctagaagtcaagttactatttgttgtttctaagacttggataggcgacaagatttttgtcaggtagtgtattagtGTGGACAATACCTAAGTCAGACACAGAACAATAAGAAGTGGATATTTTAGGagcaatatttcaataatttaaattTGATAGATAATAAAACATGTTTCAGTAATACAGTAATTACATTCAGTAATTTATAACTGCTTAATATGGTCCAATTGTGGTGGAGCTGTGGCCTAATGGTTAGTGATGGATCCAGTGTTGATGTTTATCTCTTTTACTGTTCCTTGTAGTTTAGTTGCAGCAAATTTGATGTATACGTAagctttttttgaaaatgttagtTTTTCCAATGACACTAGAAAAAAGCAGTACATAtaacttttaaaattatatatggGCATAGAACCACATTTTTTTGTGATCCATAATAGCCAATATTTTAtcatactttttttaaatcatagaTGTCTACAATTAACTCAGGTAAGCCTGACACTGCACAAATATTTACCTTGTGTCCTAATTGACTCAGCTGAGCTAAATTCTTGTGCTTTCAGAGAGCACTTGTCCGTTTAATTACCAATTACCAATGACAAACACGGGCAGGTCAGAGTTTACTGTAAGCGCCAAAAACACTTTATAGTCTTGGGTGGAgtggatatgtgtgtgtgattgtgaagGAGAGGCCATTATTTACAATCTGTTTGTTTTGGCTGCAGGGAATTACCCATTGAGATGTGGACGGAACCTTGAGTAAATCCTCTGGAAACAAACAGGTGAACTGGAGCACCAACAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010928 lncRNA upstream 414437 23037447 ~ 23040091 (+) True XLOC_004707
TCONS_00010735 lncRNA upstream 835406 22618388 ~ 22619122 (+) True XLOC_004701
TCONS_00009303 lncRNA upstream 1027473 22423953 ~ 22427055 (+) False XLOC_004697
TCONS_00010927 lncRNA upstream 1149687 22289980 ~ 22304841 (+) True XLOC_004696
TCONS_00010734 lncRNA upstream 1195130 22258962 ~ 22259398 (+) False XLOC_004696
TCONS_00010933 lncRNA downstream 119683 23589024 ~ 23605722 (+) False XLOC_004711
TCONS_00010934 lncRNA downstream 120661 23590002 ~ 23605722 (+) True XLOC_004711
TCONS_00010935 lncRNA downstream 180551 23649892 ~ 23651056 (+) True XLOC_004713
TCONS_00010736 lncRNA downstream 309611 23778952 ~ 23779177 (+) True XLOC_004716
TCONS_00010737 lncRNA downstream 343189 23812530 ~ 23859432 (+) False XLOC_004717
TCONS_00009334 mRNA upstream 24172 23424108 ~ 23430356 (+) True XLOC_004710
TCONS_00009333 mRNA upstream 38467 23371542 ~ 23416061 (+) True XLOC_004709
TCONS_00009331 mRNA upstream 521004 22921492 ~ 22933524 (+) True XLOC_004706
TCONS_00009329 mRNA upstream 538828 22870372 ~ 22915700 (+) False XLOC_004705
TCONS_00009337 mRNA downstream 194994 23664335 ~ 23674621 (+) True XLOC_004714
TCONS_00009338 mRNA downstream 293625 23762966 ~ 23796566 (+) False XLOC_004715
TCONS_00009339 mRNA downstream 293625 23762966 ~ 23796707 (+) True XLOC_004715
TCONS_00009340 mRNA downstream 343189 23812530 ~ 23932576 (+) False XLOC_004717
TCONS_00009342 mRNA downstream 381320 23850661 ~ 23870648 (+) False XLOC_004717
TCONS_00009332 other upstream 344251 23110163 ~ 23110277 (+) True XLOC_004708
TCONS_00009330 other upstream 522507 22921477 ~ 22932021 (+) False XLOC_004706
TCONS_00009319 other upstream 708745 22677953 ~ 22745783 (+) False XLOC_004704
TCONS_00009313 other upstream 793148 22657923 ~ 22661380 (+) False XLOC_004703
TCONS_00009307 other upstream 875998 22578404 ~ 22578530 (+) True XLOC_004700
TCONS_00009336 other downstream 107925 23577266 ~ 23577391 (+) True XLOC_004712
TCONS_00009341 other downstream 369458 23838799 ~ 23866353 (+) False XLOC_004717
TCONS_00009347 other downstream 441491 23910832 ~ 23910949 (+) True XLOC_004718
TCONS_00009349 other downstream 453984 23923325 ~ 23932015 (+) True XLOC_004717
TCONS_00009353 other downstream 745060 24214401 ~ 24214517 (+) True XLOC_004721

Expression Profile

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