RNA id: TCONS_00010735


Basic Information

Item Value
RNA id TCONS_00010735
length 416
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_004701
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 22618388 ~ 22619122 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTCCTGAAGAGCAGGAGAGCTGACCTATAGGATTGTTCAAACAGTTCATCTTCTAAGTGATGTAACCAATCACATTCTCGCTTCCAACCAAGGGCGGGACATTTTTTCAGATGTGGTGAAACTGTCTCTGGACAAAACTTATTCATGTTTTAACTTTAACTTAACTTATGAATATACCTTTGGGAGCATGTTAATTTCATAATTACCAACTATAACTATCATATCGAATGATTTTGCTTCTCGAAGACACTAATAAATCTGTCCAGAATGAATCACACGGACTGGAAAGAAACCACCCCGGTTTTCATAACAAGATTTGGGTCAAAGCTGATAAAGCCACTTCATACACAAGTAAGTAGATCAACAGGATATAAATCAAACTGTGTCTCATCTGCTTGCCTTCTTCTTTGCCTC

Function

GO:

id name namespace
GO:0006720 isoprenoid metabolic process biological_process
GO:0035197 siRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009303 lncRNA upstream 191333 22423953 ~ 22427055 (+) False XLOC_004697
TCONS_00010927 lncRNA upstream 313547 22289980 ~ 22304841 (+) True XLOC_004696
TCONS_00010734 lncRNA upstream 358990 22258962 ~ 22259398 (+) False XLOC_004696
TCONS_00010926 lncRNA upstream 598618 22017946 ~ 22019770 (+) True XLOC_004695
TCONS_00010924 lncRNA upstream 818992 21757817 ~ 21799396 (+) False XLOC_004694
TCONS_00010928 lncRNA downstream 418325 23037447 ~ 23040091 (+) True XLOC_004707
TCONS_00010929 lncRNA downstream 835307 23454429 ~ 23605722 (+) False XLOC_004711
TCONS_00010930 lncRNA downstream 835336 23454458 ~ 23605722 (+) False XLOC_004711
TCONS_00010931 lncRNA downstream 835406 23454528 ~ 23469341 (+) False XLOC_004711
TCONS_00010932 lncRNA downstream 835406 23454528 ~ 23491893 (+) False XLOC_004711
TCONS_00009311 mRNA upstream 308 22607761 ~ 22618080 (+) True XLOC_004699
TCONS_00009309 mRNA upstream 10501 22580627 ~ 22607887 (+) False XLOC_004699
TCONS_00009310 mRNA upstream 10501 22588923 ~ 22607887 (+) False XLOC_004699
TCONS_00009306 mRNA upstream 14077 22576404 ~ 22604311 (+) False XLOC_004699
TCONS_00009308 mRNA upstream 19321 22580579 ~ 22599067 (+) False XLOC_004699
TCONS_00009312 mRNA downstream 9582 22628704 ~ 22645215 (+) True XLOC_004702
TCONS_00009314 mRNA downstream 38803 22657925 ~ 22664563 (+) True XLOC_004703
TCONS_00009315 mRNA downstream 53201 22672323 ~ 22678549 (+) False XLOC_004704
TCONS_00009316 mRNA downstream 53203 22672325 ~ 22678549 (+) False XLOC_004704
TCONS_00009317 mRNA downstream 54908 22674030 ~ 22678551 (+) False XLOC_004704
TCONS_00009307 other upstream 39858 22578404 ~ 22578530 (+) True XLOC_004700
TCONS_00009304 other upstream 173616 22443629 ~ 22444772 (+) True XLOC_004697
TCONS_00009299 other upstream 824272 21794002 ~ 21794116 (+) True XLOC_004694
TCONS_00009295 other upstream 1180930 21437346 ~ 21437458 (+) True XLOC_004691
TCONS_00009286 other upstream 1926375 20691358 ~ 20692013 (+) False XLOC_004688
TCONS_00009313 other downstream 38801 22657923 ~ 22661380 (+) False XLOC_004703
TCONS_00009319 other downstream 58831 22677953 ~ 22745783 (+) False XLOC_004704
TCONS_00009330 other downstream 302355 22921477 ~ 22932021 (+) False XLOC_004706
TCONS_00009332 other downstream 491041 23110163 ~ 23110277 (+) True XLOC_004708
TCONS_00009336 other downstream 958144 23577266 ~ 23577391 (+) True XLOC_004712

Expression Profile

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