RNA id: TU60684


Basic Information

Item Value
RNA id TU60684
length 984
RNA type TUCP
GC content 0.65
exon number 3
gene id AMCG00014043
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49864322 ~ 49930152 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atttacaagttgccacagagagagacaggagagtacagCTGGAGAAGGGGGAGGTGAGCACGCTGGGGCTTCCCCCCGCTGCCAGCCACGGCGGCTCCGATGGCAACATCAGCTTGGACGTCCCCGAGGCGCCGGACCCCCAGCGCACGCGTGCCGCCATCGAGCACCTGCAGCAGAAGATCCTGAAGATCACAGAGCAGATCCGCATCGAGCAGGAGGCGCGGGACGAGAACGTGGCCGAGTACCTGAAGCTCGCGCACAACGCCGACAAGCAGCAGGCCTCGCGCATCAAGCAGGTCTTCGAGAAGAAGAACCAGAAGTCGGCGCAGACCATCTCGCACCTGCACAAGAAGCTTGAGCACTACCACAAGAAGCTCAAGGAGATTGAGCAGaatGGGCCATCTCGGCAGCCGAAGGACGTGCTGCGGGACATGCAGCAGGGCCTGAAGGACGTGGGCGCCAACATGCGTGCAGGCATCAGCGGCTTCGGCGGCGGCGTGGTGGAGGGCGTGAAGGGCAGTGTGTCGGCGCTGTCGCACACGGCCGTGGTGTCTAAGCCGCGCGAGTTCGCCAGCCTGATCCGCAACAAGTTCGGCAGCGCGGACAACATTGCACACCTGAAGGACGCGCTGGAAGACCCGCAGCCTGAGGAGGCGCAGCGCACGCTCAGCGGCAGCGCCACGCTGGTATCCAGCCCCAAGTACGGCAGCGACGACGAGTGCTCCAGTGCCACCTCCGGCTCGGCTGCCGGCAGCACCTccggggcgggggggggcggGCCGGGCCCCGGCATGGGCAGCCCCAAGTCCAACACCCTGGACCagcacccacccccccacagctCCTGGGACACGCTGCTGGAGGAGCTGCGCGAGATCAAGGCCAGCCAGGTGCATCTGGAGGACGCCATTGAGGACATGAAGACGCAGCTGCAGAGGGACTACTCCTACATGACGCAGTGCCTGCAGGAGGAGAGATACAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60616 lncRNA downstream 115042 49748589 ~ 49749282 (-) True G48517
TU60612 lncRNA downstream 116773 49744946 ~ 49747551 (-) False G48516
TU60607 lncRNA downstream 130152 49733909 ~ 49734172 (-) True G48512
TU60604 lncRNA downstream 137317 49726288 ~ 49727007 (-) True G48509
TU60603 lncRNA downstream 138075 49725735 ~ 49726249 (-) True G48508
AMCG00014042 mRNA downstream 32953 49820480 ~ 49831371 (-) True AMCG00014042
AMCG00014045 mRNA downstream 46048 49814049 ~ 49818276 (-) True AMCG00014045
AMCG00014047 mRNA downstream 59723 49796846 ~ 49804601 (-) True AMCG00014047
AMCG00014048 mRNA downstream 69558 49791343 ~ 49794766 (-) True AMCG00014048
AMCG00014046 mRNA downstream 75578 49783272 ~ 49788746 (-) True AMCG00014046
AMCG00014044 mRNA upstream 1008 49931160 ~ 49934490 (-) True AMCG00014044
TU60614 other downstream 116773 49744946 ~ 49747551 (-) True G48516
TU60605 other downstream 135269 49728504 ~ 49729055 (-) True G48510
TU60601 other downstream 142798 49719765 ~ 49721526 (-) True G48506
TU60452 other downstream 365694 49494727 ~ 49498630 (-) True G48392
TU60423 other downstream 379557 49484500 ~ 49484767 (-) True G48373

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000186_00427652_00430661.mRNA True 1792 mRNA 0.52 4 CI01000186 427652 ~ 431316 (+)