RNA id: TU49527


Basic Information

Item Value
RNA id TU49527
length 869
RNA type TUCP
GC content 0.46
exon number 1
gene id G39709
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7835346 ~ 7836214 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attggTGCACAAATCTTTCCCTAGAAGatttcactgtagggatggtattggccaggtgatgagcggtgcatggtttcctccagacatgacacttgccattcaggccaaagagttcaatctttgtttctcatggtctgagagtccttcaggtgccttttggcaaactccaggtgggctgtcatgtgccttttactgaggagtggcttccatctggccactctaccatacaggcctgattggtggagtgctgcagagatggttgttcttctggaaggttctcctctctccacagagacgtgctggagctctgtcagagtgaccatcgggttcttggtaacctccctgactaaggcccttcttccccgatcactcagtttggccgggcggccagctttaggaagagtcctggtggttccaaacttcttccatttacggataaTGGAGgtcactgtgctcattgggaccttcaatgctgcagataTTTTTCTGtaccttccccagatctgtgcctcgatacaatcctgtctcagcAGTCTACAggcaattccttggacttcatggcttggtttgtgctctgacaggCACTGTTAACTGTAGGACCTTacatagacaggtgtgtgcctttccaaatcatgtccaatcaactgaatttaccacaggtggactccaatcaagttgtagaaacatctcaaggatgatcagtggaaacgggatgcacctgagctcaattttgagtgtcatggcaaaggctgtgaatacttatgtacatgtgctttttttgtttttatttttaatacatttgcaaagatttcaaacaaacttctttcacgttgtcattatggggtattgtttgtagaattttgagagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49475 lncRNA upstream 100078 7714497 ~ 7735268 (+) True G39669
TU49474 lncRNA upstream 122103 7708867 ~ 7713243 (+) True G39668
TU49424 lncRNA upstream 472985 7360820 ~ 7362361 (+) False AMCG00012763
TU49358 lncRNA upstream 616887 7213745 ~ 7218459 (+) True G39586
TU49318 lncRNA upstream 937116 6897997 ~ 6898230 (+) True G39560
TU49569 lncRNA downstream 70043 7906257 ~ 7909166 (+) True G39737
TU49633 lncRNA downstream 220805 8057019 ~ 8132564 (+) True G39776
TU49699 lncRNA downstream 432780 8268994 ~ 8269221 (+) True G39838
TU49733 lncRNA downstream 499684 8335898 ~ 8342053 (+) True AMCG00012797
TU49788 lncRNA downstream 700019 8536233 ~ 8569891 (+) False AMCG00012803
AMCG00012775 mRNA upstream 2558 7821972 ~ 7832788 (+) True AMCG00012775
AMCG00012768 mRNA upstream 379940 7426981 ~ 7455406 (+) True AMCG00012768
AMCG00012767 mRNA upstream 412573 7396579 ~ 7422773 (+) True AMCG00012767
AMCG00012763 mRNA upstream 453787 7344450 ~ 7381559 (+) True AMCG00012763
AMCG00012761 mRNA upstream 542442 7290851 ~ 7292904 (+) True AMCG00012761
AMCG00012777 mRNA downstream 26045 7862259 ~ 7864830 (+) True AMCG00012777
AMCG00012778 mRNA downstream 100166 7936380 ~ 7958975 (+) True AMCG00012778
AMCG00012786 mRNA downstream 197880 8034094 ~ 8034399 (+) True AMCG00012786
AMCG00012785 mRNA downstream 205588 8041802 ~ 8077147 (+) True AMCG00012785
AMCG00012797 mRNA downstream 501941 8338155 ~ 8345855 (+) False AMCG00012797
TU49477 other upstream 107518 7725488 ~ 7727828 (+) True G39670
TU49223 other upstream 1317425 6517408 ~ 6517921 (+) False AMCG00012748
TU49057 other upstream 2012026 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 2282579 5552417 ~ 5552767 (+) True G39297
TU48550 other upstream 3461772 4370313 ~ 4373574 (+) True G38954
TU49939 other downstream 1276246 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 2600693 10436907 ~ 10444447 (+) True G40224
TU50139 other downstream 2600693 10436907 ~ 10444447 (+) False G40224
TU50140 other downstream 2600693 10436907 ~ 10444447 (+) False G40224
TU50630 other downstream 4652361 12488575 ~ 12535929 (+) True G40629

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2242097 False 3866 lncRNA 0.38 1 NC_048589.1 20704957 ~ 20708822 (+)
striped catfish (Pangasianodon hypophthalmus) TU382191 True 1152 lncRNA 0.41 1 NC_047615.1 18811184 ~ 18812335 (+)