G40629


Basic Information

Item Value
gene id G40629
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12488575 ~ 12535929 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU50630
CGCAGTACAGAAATCATTTGAGCCTTTAAAACATGCACTGCCCCTCTCTCACACGGCTCTGTCATATCAATACCGCATTGCAGTTTGGTCCCCCTTGTTTCATTAAGTAAGTAGTACATAGAATGCAGTGACATCTTGCctgcttttatttcttcagtttttatttgtttaaaggagagagagaaaaagaatcTTTAAGTACAATGTATTACTCATACTGCTTTGAACAGGGACTGGTTTAAGTATAATGCTGTGTCCTGCACTTCAGCTGTTGGGAAGGTTTGGCTACAGTAAAATTGAGTAGTCGCTCTAGAAATGTGCGTCATTATTTGACAAACTCAAATTGCACTGCAGGAGACATTGGCCACTGACTatagtaaaacattttagattcattttacataatttataaaccaggaaaaaaaaaaaaaaaatcagcttttttgttttaattagttacACATCCTTTAGTTTTAAATACTCGGGCATCTAAATGGTCATtcagtgttttcagttttgcaatggacttgtttaaatgtaaagactACTATTTAATAGTATTGCATATACTTTTCATAACCGATAATTTGGCATCTTTGGACAGAACCCCCCCTCATTCATCAGGAAATTGAATACATGATGTCAAGATAAATGATGGGCATTAACCTAGAATCAGTGCAACACTTGTCAAAATGGGATTATAAAAAGCAGGACCCACAATACAAATTTATGCAGTGTTCATTAACTTCCTCAACGGACAAAACACATATTGAAATCAGCCGGTACTTTTATATTATGGTCGTTTGTAATATTTGCTGGGAgtgtgtatttcttattttgtttttactgatcGACATCTCCAAAGATGTCAGTCTTCTTGCGCTCCATTTCTGCAAAGTCAAATTCTGTGCCCATCATCCTCTTGTAGATGTCTTTGATGTCGTCGCAGGTGGTCTCGAAGTGGGTCGTGGCATCATAAGAACGGGAAATGAAGATCTAGGAACTGAGag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50630 True 1010 TUCP 0.37 2 12488575 12535929

Neighbor

gene id symbol gene type direction distance location
AMCG00012892 LOC103383002,LOC106525804 coding upstream 96470 12383058 ~ 12392105 (+)
AMCG00012885 NA coding upstream 246361 12235367 ~ 12242214 (+)
AMCG00012886 plxna4,LOC106921988 coding upstream 435462 12021466 ~ 12053113 (+)
AMCG00012887 plxna4,LOC107555548,LOC107592200,LOC107729844,LOC107690636,LOC107725603,LOC107676920 coding upstream 480144 11963359 ~ 12008431 (+)
AMCG00012883 plxna4,LOC107592200,LOC107676920,LOC107725603,LOC107555548,LOC107729844 coding upstream 697029 11785938 ~ 11791546 (+)
AMCG00012896 LOC107580939 coding downstream 57956 12593885 ~ 12609201 (+)
AMCG00012897 NA coding downstream 82838 12618767 ~ 12627577 (+)
AMCG00012900 NA coding downstream 304312 12840241 ~ 12867057 (+)
AMCG00012904 NA coding downstream 348560 12884489 ~ 12901327 (+)
AMCG00012905 atp5c1,LOC107748457,LOC107675979,LOC107555824 coding downstream 370456 12906385 ~ 12916433 (+)
G40604 NA non-coding upstream 136847 12350850 ~ 12351728 (+)
G40571 NA non-coding upstream 293889 12194485 ~ 12194686 (+)
G40555 NA non-coding upstream 743780 11744596 ~ 11744795 (+)
G40497 exoc4,LOC107744930,LOC107725510,LOC107585070 non-coding upstream 1020357 11466221 ~ 11468218 (+)
G40498 NA non-coding upstream 1083219 11405005 ~ 11405356 (+)
G40710 NA non-coding downstream 205245 12741174 ~ 12742694 (+)
G40776 LOC107575789 non-coding downstream 578964 13114893 ~ 13115253 (+)
G40777 NA non-coding downstream 579383 13115312 ~ 13115532 (+)
G40788 LOC107575789 non-coding downstream 724715 13260644 ~ 13261179 (+)
G40824 NA non-coding downstream 1347332 13883261 ~ 13885189 (+)
AMCG00012848 NA other upstream 1946615 10540728 ~ 10541960 (+)
G40224 NA other upstream 2044128 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 3358364 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 3402875 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 3918684 8536233 ~ 8569891 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 1892384 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 1980854 14516783 ~ 14529806 (+)
G41059 NA other downstream 2096428 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 2545490 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 2762033 15297962 ~ 15317344 (+)

Expression


Co-expression Network