AMCG00012961


Basic Information

Item Value
gene id AMCG00012961
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15297962 ~ 15317344 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012961
aTTTCTGCCCCCTCAGCCTCCTGATGTCAAGATGTTTTCAGACACCGTGGCCTCCAGTTTCTCCTCTGCCATCGTGGGGTACGCAGTGGCTGTCTCTGTGGGGAAAGTGTACGCTAATAAATTTGACTACACAATAGACGGAAATCAGGGGCATTCTCCGGCTTCCTTGCCACCACGATTGGCCTTTGCCTTGCTGGTCGCCATCCCACCTAAATATGGTCTTTACGCTGcatttttccccattttgtCCTATTTTATTATGGGAAcctcaaaacatatttctgtaGGCCCCTTTCCAGTGACCTCTTTGATGGTGGGGTCAGTGGTCTTGACAATGGCTCCAGATCAGAACTTTATGGTAGCTTCTAATGGCACCAATGGAACTGTTATTGACACAGCGGCCAGAGATGCATACCGGGTTATGGTGGCTGGCACTATGACCTTCCTGATTGGTTTATTTCagCTGGGCATGGGAGTACTCCAGATTGGGTTTCTGGTACGATACCTCTCTGACCCCTTGGTGGGGGGCTTCACCACCGCAGCTGCGTTCCAAGTCTTTGTCTCTCAAGTAAAACTAGTTCTTTCAGTGCCAACATTTAACTACGATGGAGTTCTTTCAATCATATATacagtcattgacaTTTTCAAGAATATTCATCTCACCAACATTGCGGATCTGGTTGCGGGTTTGCTGACAATTTTAGTTGTAATTACAGTAAAAGAACTCAACACTAAATACCAGCATAAAATTCCAGTGTCAATTCCCATTGAAGTCATAGTGACGTCCAGAATCAGCCCGTCCTGCTCTGCCCTTGCCAACGTCCCAGGCACAGACCTCTATAAGAACATTAAGGACTACAAGAATCTTAGAGAAGAACCGGGAATAAAAATCTTCAAATGCAATTCTTCCATCTACTTCGCCAATATCGATTTCTTTAGAGACCGCTTGAAGGCAATCGTGGGGGTGGATGCAGTGAGAGTTCATAAGAAGAGGACCAAGGCCCTGAAGCAGATACAGAGACTCATTAAGAAGGGAAGGTTAAGAGTGACTAAGAAAGACAAAGTCCCTGAGGAAGTGGAGGACAATGAAATCCCCAGCACACAGGTGGACATACAGGTGGACTGGAATTCTGATCTGCTGGTGAACGTGGCTGTGCCAAAAGTCCATATCCACAGTCTCATCTTGGATTTTTCAGCTGCGTCCTTTCTTGATGTCGTGTCTAGAGTCTGTACAAATGATGATGATGAAATTGCCCACAAACTGGAATTGTGTGACTTTTTTGACGACATGGTGAAGAGGGACATTCTGTTCCTGACTGTGCACGACGCAGTCCTCTTCATTAAGCTGCAGATCATCAACGGCACCATTCAGGATCCCATATATGACATGATTGCTGGTATTCTTTCAGCCTTAATAGTTTTGATTGTCATAGTTGCCCTGGGACCCTTCCTGGAACCTCTACAAAAGTCGGTTCTGGCAGCCATCGTCATCGCCAACCTCAAAGGAATGTTCATGCAGGTTCTGGATGTTCCTCTCCTCTGGAAGCAGAACAAAACCGACTCTGTAATTTGGGTCTTTACCTGCATTGGATCCATAATCCTGGGACTCGACATTGGGCTCCTGGCAGGTGTGGTGTTTGAAATGGCCACAGTGGTGGTTAGAACCCAG
>TU51392
AAAttagtcaggacatttcagataacacatgaggttaatttaggcagatgaagaatttggttggaaaaaaataatttggaaatacttaaaactttagagttaaaatggactttacttcttttgcaagtggtttatgagagacatgccctgagattatagaatatagtgaaggtgtcatataattacaattaatacaaaaGAGCTGCTAGCATTTGGGGTATGCAATGTTTTGACAGGGGCATTCTCCGGCTTCCTTGCCACCACGTCACTGTCT

Function

GO:

id name namespace
GO:0009651 response to salt stress biological_process
GO:0055081 anion homeostasis biological_process
GO:0055085 transmembrane transport biological_process
GO:0008272 sulfate transport biological_process
GO:0006821 chloride transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008271 secondary active sulfate transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012961 True 1669 mRNA 0.46 16 15297962 15317344
TU51392 False 274 lncRNA 0.35 2 15301188 15301561

Neighbor

gene id symbol gene type direction distance location
AMCG00012960 NA coding upstream 18715 15274952 ~ 15279247 (+)
AMCG00012962 NA coding upstream 37037 15260248 ~ 15260925 (+)
AMCG00012957 NA coding upstream 73449 15212988 ~ 15224513 (+)
AMCG00012953 NA coding upstream 146139 15145480 ~ 15151823 (+)
AMCG00012950 ing3,LOC106576172,LOC106609303 coding upstream 221084 15067090 ~ 15076878 (+)
AMCG00012963 cog5,LOC106609192 coding downstream 103499 15420843 ~ 15475870 (+)
AMCG00012972 NA coding downstream 208690 15526034 ~ 15531609 (+)
AMCG00012974 NA coding downstream 228291 15545635 ~ 15554052 (+)
AMCG00012980 NA coding downstream 298913 15616257 ~ 15618444 (+)
AMCG00012983 NA coding downstream 314082 15631426 ~ 15639738 (+)
G41230 NA non-coding upstream 10146 15285341 ~ 15287816 (+)
G41225 NA non-coding upstream 12674 15237287 ~ 15285288 (+)
G41226 NA non-coding upstream 33389 15248378 ~ 15264573 (+)
G41184 NA non-coding upstream 131493 15160436 ~ 15166469 (+)
G41158 NA non-coding upstream 342923 14926325 ~ 14955039 (+)
G41265 NA non-coding downstream 163347 15480691 ~ 15483321 (+)
G41282 si:dkey-180p18.9,akr1b1,LOC107729832,LOC107690495,LOC107587162,LOC107725652 non-coding downstream 238802 15556146 ~ 15559305 (+)
G41303 NA non-coding downstream 402163 15719507 ~ 15722866 (+)
G41325 NA non-coding downstream 541720 15859064 ~ 15859370 (+)
G41469 NA non-coding downstream 756170 16073514 ~ 16074099 (+)
AMCG00012954 NA other upstream 161233 15081419 ~ 15136729 (+)
G41059 NA other upstream 664549 14632357 ~ 14633413 (+)
AMCG00012940 LOC107748465 other upstream 768156 14516783 ~ 14529806 (+)
G40999 metap2,LOC108428789,LOC100194705 other upstream 864761 14428313 ~ 14433201 (+)
G40629 NA other upstream 2762033 12488575 ~ 12535929 (+)
G41264 hbp1,LOC108230206,LOC107701066 other downstream 159835 15477179 ~ 15818342 (+)
AMCG00012973 NA other downstream 249149 15566493 ~ 15569943 (+)
AMCG00012978 NA other downstream 253562 15570906 ~ 15573468 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other downstream 303391 15620735 ~ 15631003 (+)
AMCG00012987 NA other downstream 465020 15782364 ~ 15791627 (+)

Expression


Co-expression Network