AMCG00012973


Basic Information

Item Value
gene id AMCG00012973
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15566493 ~ 15569943 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012973
AGAAGAGTCAGAAACTTTGCCCTTTCGATGGGGTAATAGAAGACACGCCCGGAATAATCTAAGTACTGTATACATTCATCATTTAACTATATGCCGAGAAAGACAGATACTTTTGATCTACAGatacaattgtataaaatgCGTAGTTTTTAAATCTGGGAACCAATCAGGaagactgtactgtactctttACGAAAAACTACGGAACACCTTTAAAAGAGGAAACATGCTACAGTTTTTGGTGGGCTTTACCCTGGGGAATGTGGTCGGGATGTACCTAGCACAGAACTACGAGgtcCCTAATATTTCAAAGAAGATAGAGGATTTCAAACGAGATGTGGAAGCAAAGAAGAAACCCCCGGGGTCTTGAGAAAGAAGACTTCCATcagggatgggggtgggggggcaataTGTTGGAAGGAAGGATTAAAAAGCATATATACAATTGTGTTGGACATTAAACCCCCTTTTGCTGGCTTCTAAATGTTGTTTATGCTTGTCCTTTCTTCAAGTAAAGCCACATCCCCAGGGTGTCAGAAGCATAAGGATAAGACCTCAGGTGGCAGAAAGTGCATTTGCAGAGAAAAAGCTTTTGGGTAGAGAAGACATCATGAATGCCTTTGTATTGATGCGCATAGAGATTGCTATTGCAGGGTGCATATATCCAGACATTAGATATTGATATTAACTTGCTTTTTCAGAGTATTGTTGTTCAGGGAAGCTTAgattgtttaatacatattcataGAACCTCTTTAATCTTTTGTTAAactatatttcttaaaaaataactttttatttacaataaacctggattttcttttggatttgatttatttgtgtacttgttttctttgtttctacTTTTAGTATTTTACTTAATCAAAGTAGACCATTGGTATTGTGGTGTTCATAGGAGTTCAT
>TU51458
AACTTTGCCCTTTCGATGGGGTAATAGAAGACACGCCCGGAATAATCTAAGTACTGTATACATTCATCATTTAACTATATGCCGAGAAAGACAGATACTTTTGATCTACAGatacaattgtataaaatgCGTAGTTTTTAAATCTGGGAACCAATCAGGaagactgtactgtactctttACGAAAAACTACGGAACACCTTTAAAAGAGGAAACATGCTACAGTTTTTGGTGGGCTTTACCCTGGGGAATGTGGTCGGGATGTACCTAGCACAGAACTACGAGgtcCCTAATATTTCAAAGAAGATAGAGGATTTCAAACGAGATGTGGCAGAAAGTGCATTTGCAGAGAAAAAGCTTTTGGGTAGAGAAGACATCATGAATGCCTTTGTATTGATGCGCATAGAGATTGCTATTGCAGGGTGCATATATCCAGACATTAGATATTGATATTAACTTGCTTTTTCAGAGTATTGTTGTTCAGGGAAGCTTAgattgtttaatacatattcataGAACCTCTTTAATCTTTTGTTAAactatatttcttaaaaaataactttttatttacaataaacctgga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012973 True 924 mRNA 0.37 3 15566493 15569943
TU51458 False 581 lncRNA 0.36 4 15566505 15569834

Neighbor

gene id symbol gene type direction distance location
AMCG00012974 NA coding upstream 12441 15545635 ~ 15554052 (+)
AMCG00012972 NA coding upstream 34884 15526034 ~ 15531609 (+)
AMCG00012963 cog5,LOC106609192 coding upstream 90623 15420843 ~ 15475870 (+)
AMCG00012960 NA coding upstream 287246 15274952 ~ 15279247 (+)
AMCG00012962 NA coding upstream 305568 15260248 ~ 15260925 (+)
AMCG00012980 NA coding downstream 46314 15616257 ~ 15618444 (+)
AMCG00012983 NA coding downstream 61483 15631426 ~ 15639738 (+)
AMCG00012986 NA coding downstream 135655 15705598 ~ 15715080 (+)
AMCG00012988 sap30bp,LOC107725325 coding downstream 273910 15843853 ~ 15859012 (+)
AMCG00012991 NA coding downstream 301149 15871092 ~ 15912709 (+)
G41282 si:dkey-180p18.9,akr1b1,LOC107729832,LOC107690495,LOC107587162,LOC107725652 non-coding upstream 7188 15556146 ~ 15559305 (+)
G41265 NA non-coding upstream 83172 15480691 ~ 15483321 (+)
G41230 NA non-coding upstream 278677 15285341 ~ 15287816 (+)
G41225 NA non-coding upstream 281205 15237287 ~ 15285288 (+)
G41226 NA non-coding upstream 301920 15248378 ~ 15264573 (+)
G41303 NA non-coding downstream 149564 15719507 ~ 15722866 (+)
G41325 NA non-coding downstream 289121 15859064 ~ 15859370 (+)
G41469 NA non-coding downstream 503571 16073514 ~ 16074099 (+)
G41484 NA non-coding downstream 551500 16121443 ~ 16124871 (+)
G41517 NA non-coding downstream 763347 16333290 ~ 16333574 (+)
AMCG00012961 NA other upstream 249149 15297962 ~ 15317344 (+)
AMCG00012954 NA other upstream 429764 15081419 ~ 15136729 (+)
G41059 NA other upstream 933080 14632357 ~ 14633413 (+)
AMCG00012940 LOC107748465 other upstream 1036687 14516783 ~ 14529806 (+)
G40999 metap2,LOC108428789,LOC100194705 other upstream 1133292 14428313 ~ 14433201 (+)
AMCG00012978 NA other downstream 963 15570906 ~ 15573468 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other downstream 50792 15620735 ~ 15631003 (+)
AMCG00012987 NA other downstream 212421 15782364 ~ 15791627 (+)
AMCG00013015 NA other downstream 1149412 16719355 ~ 16729533 (+)
AMCG00013047 NA other downstream 2588899 18158842 ~ 18230238 (+)

Expression


Co-expression Network