AMCG00012954


Basic Information

Item Value
gene id AMCG00012954
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15081419 ~ 15136729 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012954
ATGCACACATTAAGCCCGTGTGTGCGGAGCTGTGCGGCGGTGCGCCTGGCCCGGGGGGTCCTGCGGGAGCTGGGCGTGCTCCCCCGGGCGCTGTGGCTGCGCCGCCGGCGGGTCTGTGTCCGGCCAGTGCTGCTGGTCCTGCTCGCCGCCGTCCTCTTCTACCAGACCCTGATGGTGGCCAGGGGTCGCTTTAAATGGAGCCAACCGGGATCTGACGAGGGGAATACATCCACCGAAACCGGGGCCCCGAAGGACCACTGGAAGCGAGCCGCGCCGAGAAACTTCGGGCGTCTTGTGTCTTTGCTGGATGTCGTATTAAACCTGACACACgtcGAAACAATCCATCGCAACCAAGCTGGAAGCACCAAAAGGGCAGTGGTCCTGACAGGCTACTACCTAACAACTGGCACAGAGGTACAGCTGTATCAGCGTGTACTAGAGCAGCATGGGTATACAGTCAGTGTATCAAGGCATGCAGAAACCAGCCCTGTACTCAAGCTGAACTACAACCAGCAAGATGGCAGTAGTTGGGATATCCTGATTTGCCTGCAAAGTTCTGAAAGAAGCTGCCTGACTAAGATAGATTTCAATAAACTGCAACCTCTTCAGAAGGTCAACATGATCCCAGGAATTAAGCAGGCATTCTCCAGTAAACACGGGCTGTGCCTTCTTCAGTCTGATGAAAGGCTGTCAGACGTACGGCTTCCAATTTCTGCTCTCGCCTGTGCGGCTCACAGTGTCCGGCCAGGGGACCCCAGCCACCCTGTCAGGGACAAAGGGATCAGGCCTAGTGCCCCTCAGGACCTCTCGGTGGGACAGGATGCCTTTGTCACCGTCCGGGTGTACGTACTCATCACCTCCATAACGCCGCTCACGGTTTTCTTTCATTCCACGGGGCTGGTGAGGACCGAGCCCCAGAAGCACAGCTACGCGGCCAAGttgcatgtgtttttcctgaGAGCTCTTGGGAAAGAAAGCGCACTTCAGGCTTTGATCAACATGAAGGAGACCATTGGGCAGATTGTAATGGCAGCAGCACTGTCTGGGCAAAGCTCATCCACAAGACATCCGACTTTGACAAGGTGTAGGTTCTGTTTTCAGTGGATGACCTTCACTCTGAGCTTCAACTCGTCACTGGTGCCTGAGGTGGTGAAGGTTCAGGATGAGTTAAACTTTGACGATTTAGAGGATCCTATTTTCGATGGCCAAATAACCAAAGAGCTCATCCTGGAGGACGTGCTGAACTTTGTGTTGCCCAGCTTCTCCGAAAGCGATGGCCTACTGCAAacctttcaaaatacattgagGGAATTGGGGGAAACGGCAACTGAAAGATCCGGGACCTTTCGAAttgATAAATGCACAACACCCCATCTCAGGCAGCTGTACACCAACCCTCCCCTGGACCTGACTCCTCCCTTCAGCCCTCGGATCAAAGAGTACCATGCTCAGGTGCCCTTTGATGTCATGACAGTAAAGATTAGAGCCGAACCTATCAACTGTCATTGCCAGGTGCGTCTGGATGAGCGCAAGGGACCCAGGACTGCTAACTACCCCGTTGGCCTGGGCAACAGCAGAATTCGAATCCTGGTGGTGGACGAGTCTGGGGCAGAACCCGTTGTCATGACGATCTACACCCTCAACATTTACAGAGAAAGCCGTCCTGGTCTGCCCATGTTTGGGGACTATGTAGTGTGTGGGTTTGTACAGCCTAAGGAGGTGCCTGAACCCTTCACACAGGTCTCAGCTGGACTGGACCTCCAGCGCACACATGAGAGCTGGCAGGGTTTGCAGCTGCTGTGCCTGATCAGTCAGTGGGGCTCTGGCCCCAGGGGAACAGAGGCAATGGAGGATAGCTTTAAATGCTCCCACATGGCCTCTGATCAGCATTGGCTGCAAGACGTTGCAGGCAGGGACTGTGGACTGATCATACAACCCTCAGAGTCCTGCGGCTTGGCACCAGTCCCCACCCCCCAGCCTTCAGGAGAGTCTGGGGGTCGAGCTCCCTGTCTCTCTGGGGATGCGAGAGGCCGCTGGATCGTTCCTTGCCTTAGCTGCTCCGACAACAGAACCTGTGATTGGAGGGAGGTTACCTGGCAACCTGACCACTGCTACCACCCCCTGCTAGACTGGCCCCAGCTGCAAGCgtgcatgagagagagaaagGTTCTCTTTATTGGGGATTCCACCAATCGAGGCATGATGTACTACCTCTTGGAACATGTGAACGAGACTCTGGGCGATTGGGACAAAGCACATGACACTATAGTCTACCACAATGTGAACAAAGGAAAGACTCTGATCAGCTACTCCTACTACCCTCAGTTCTGGCTGAGTAAAGACCAAAGACccacatttgaaaatgcattacgGCAACTTATTCAGAGatcccGTCCATTGGAGGACTCAGAGCAGACGGTGCTGGTGGTGGGAGGAGTGCAGTGGCTCAGCACCAGTCACCTACAGATCATACACCAGGTCCTGAAAAGGGAGGACCTTCTGAACATCCTCGTTGTGATCAAGTCGCTCGGCATGGGCTTTCACCTGCCCGTGGATGGGGTGCGCTCTCTTGCTCTGGATGGAGTACAAGACCTTTAtcaagaaaatgagaaaattcTTATTGCTGCCAAGCAATATGGCTATGAAGTCATCGATACCTTCAGTATTACGATGGGCCGCTACAAGGAGTTCCTGCAGGGAAGATGTGCATGTCACTTCCATGAGgtaGGGAAGCTGACATTTTCAGATGCACCCCTTCACAGAAAAATGAAGCTCTCCAGACACTCTAGGAAAAATGTGAGCAGTCCCAGCAAGCTACCAGGACTTCAAGACTTTCAGTCAATTTTGAACTCACCGTATCATGTCAAAGGCCCTATAAATCAAGATCTGCACGAATCAAAGGAGACGTCCGAGTGCAGAGCCCCAGTAAGATCAAGTCTGCTCCTCAGACAGAGGCTCCCCGCTTTCCCTCCAGATCAGGCCAAGAAGTACATTCGCTTTGCTTTCCCATTGGCTGAGATGGGAATGACCAAAGACACATGA
>TU51320
agatcccGTCCATTGGAGGACTCAGAGCAGACGGTGCTGGTGGTGGGAGGAGTGCAGTGGCTCAGCACCAGTCACCTACAGATCATACACCAGGTCCTGAAAAGGGAGGACCTTCTGAACATCCTCGTTGTGATCAAGTCGCTCGGCATGGGCTTTCACCTGCCCGTGGATGGGGTGCGCTCTCTTGCTCTGGATGGAGTACAAGACCTTTAtcaagaaaatgagaaaattcTTATTGCTGCCAAGCAATATGGCTATGAAGTCATCGATACCTTCAGTATTACGATGGGCCGCTACAAGGAGTTCCTGCAGGGAAGATGTGCATGTCACTTCCATGAGgtaGGGAAGCTGACATTTTCAGATGCACCCCTTCACAGAAAAATGAAGCTCTCCAGACACTCTAGGAAAAATGTGAGCAGTCCCAGCAAGCTACCAGGACTTCAAGACTTTCAGTCAATTTTGAACTCACCGTATCATGTCAAAGGCCCTATAAATCAAGTTTATTCTGAAATCCTTCTCGGCAGGATCTGCACGAATCAAAGGAGACGTCCGAGTGCAGAGCCCCAGTAAGATCAAGTCTGCTCCTCAGACAGAGGCTCCCCGCTTTCCCTCCAGATCAGGCCAAGAAGTACATTCGCTTTGCTTTCCCATTGGCTGAGATGGGAATGACCAAAGACACATGACGCCTTTCTTGGCTTTATGAGATCAAGATGGGCTGCTGTGGAACTCTAGTGGTTAGAGAATGGCAGACGGTGAAAGAGTGAAAACCAATGGGACCTGACGTCTTgccaaaaatgaataaaacagctGCAGACAAAGGAAAATATGTTGCACACACTTGTGAAGTCTACAAAAGGTTTCATTTCCTAAATTAAACAGCTAGGAATGCTTTCCTCCAATATACATTGAAGTGCATTTACTCTTTCAGAGGCTCGTTTATCATAAGCAGTGTTATTTTGATGTCTATGTGTACCACAGATGCCTTAATTTAGTACTTTGTGTCAAAGCTGTATTTTCTTgaatctattttatatatatatatatatatatacagcgcTATTTGTTACAgtttatgtactgtacatacatacctCACTGAGTTTCGTGCATTTGAAATGCTGTCCTAAGCAATAAGTCTATGCCAAATTCTTAACTTATGATAAATGCCTGAAGTATTTCTAAggtctgtttatatttttatacatatttgtattttatggtgATACAACTTTGTacaatattcatgttttgaacagtattttacaacaaaacaaagtatatattttgtatatagatAAGATCTGAATTTATTATCAGTTTTTATGCGGGTTTTGGTATTCTTCTACCAAACTTGATTTAGTATTGAAGTATTTTTGTGTGCACAGAGACCAATAATGGAAACAATTGATAGcctattaaataatgcattaaggTAATTCAATATCTCGCCTCCTGTTTACAGTagatattttgtgtatttggagtactttatatatttatattttggctttttgtgtgtatatatcagaCTTAAAATACTGATATTACTGATAAAGATGCACAATTCATAATAACATAGAAAATACCTGGCACCAGAGTTGCACAGATGTCACAATTACCAAGTCACTACATCCATGAGTGATGCAAAATGGAACCATGTTTTTGAATGCAATGTGGACATTTTATGCACACAAAATGTGTAGTTTTCATACAGGAAAGCCTCCATTTGGGTTGTTTTGCAAGGTTTGATACTTACTGTGACACAGAAATTTGGAGATACCAATGATATAAGAAAACTGCTGTGAATTTCCTGTTGTTAAATTCCAGGGCAGTGCAGAAGATAAAGGTCCCAGTTCTGTGAGTGCTGAAGGAAGGGTCTCTTCATGTGGCCCAATATTCACAGAGCAGCACATGTATTGCATTGCTGATGAtgcttatatttaataatagcaATATTTAACAAGCAAGAATGTCTTTCCTGAAAACATTTGCACTTATGGGcttttctgaacattttttttctgaattcataaaaaaaaatgaaaccagtaaagcatacatattttacagactCCAATGAAATGTCCAGAATtccatttttgtatatatactatAGTGTTTTGGAAGCTGTGCCCAAAATccatttacaatacaattaaatatgttttgatgaTGAAAGATCTATTTGTACCTGGTATGATCCACCTATTTAAAGGACATTTTGCGattattttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012954 True 3042 mRNA 0.53 23 15081419 15135177
TU51320 False 2235 TUCP 0.38 4 15130795 15136729

Neighbor

gene id symbol gene type direction distance location
AMCG00012950 ing3,LOC106576172,LOC106609303 coding upstream 4541 15067090 ~ 15076878 (+)
AMCG00012951 NA coding upstream 32574 15043019 ~ 15048845 (+)
AMCG00012952 kcnd2,LOC108412901,LOC107658801,LOC107744998 coding upstream 105597 14974710 ~ 14975822 (+)
AMCG00012949 LOC108428177 coding upstream 158457 14878762 ~ 14922962 (+)
AMCG00012945 NA coding upstream 230343 14834490 ~ 14851076 (+)
AMCG00012953 NA coding downstream 8751 15145480 ~ 15151823 (+)
AMCG00012957 NA coding downstream 76259 15212988 ~ 15224513 (+)
AMCG00012962 NA coding downstream 123519 15260248 ~ 15260925 (+)
AMCG00012960 NA coding downstream 138223 15274952 ~ 15279247 (+)
AMCG00012963 cog5,LOC106609192 coding downstream 284114 15420843 ~ 15475870 (+)
G41158 NA non-coding upstream 126380 14926325 ~ 14955039 (+)
G41096 NA non-coding upstream 344758 14735821 ~ 14736661 (+)
G41092 NA non-coding upstream 352970 14728182 ~ 14728449 (+)
G41084 NA non-coding upstream 376234 14704960 ~ 14705185 (+)
G41082 NA non-coding upstream 390745 14690110 ~ 14690674 (+)
G41184 NA non-coding downstream 23707 15160436 ~ 15166469 (+)
G41225 NA non-coding downstream 100558 15237287 ~ 15285288 (+)
G41226 NA non-coding downstream 111649 15248378 ~ 15264573 (+)
G41230 NA non-coding downstream 148612 15285341 ~ 15287816 (+)
G41265 NA non-coding downstream 343962 15480691 ~ 15483321 (+)
G41059 NA other upstream 448006 14632357 ~ 14633413 (+)
AMCG00012940 LOC107748465 other upstream 551613 14516783 ~ 14529806 (+)
G40999 metap2,LOC108428789,LOC100194705 other upstream 648218 14428313 ~ 14433201 (+)
G40629 NA other upstream 2545490 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 2581017 12453239 ~ 12500402 (+)
AMCG00012961 NA other downstream 161233 15297962 ~ 15317344 (+)
G41264 hbp1,LOC108230206,LOC107701066 other downstream 340450 15477179 ~ 15818342 (+)
AMCG00012973 NA other downstream 429764 15566493 ~ 15569943 (+)
AMCG00012978 NA other downstream 434177 15570906 ~ 15573468 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other downstream 484006 15620735 ~ 15631003 (+)

Expression


Co-expression Network