G41225


Basic Information

Item Value
gene id G41225
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15237287 ~ 15285288 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU51379
GGTGAAAGTGGCTGTGCCAAAAGTCCATATCCACAGTCTCATCTTGGATTTTTCAGCTACGTCCTTTCTTGATGTCGTGTCTGTGAAGTCCTTAAAGCtgGTCATTAAAGAGTTCATGAGAATAAGTGTGAATGTCTACATCGCTGGATATGATGAGGGACATTCTGTTCCTGACTGTGCACGACGCCGTCCTCTTCATTAAGCTGCAGATCATCAACGGCACCATTCAGGATCCCATATATGACatgATTGAATTGATGCAGACATCCAGAGATCCCATACTCTTAACTGACGATGAAGAAGTTGAGACTTATGACAATCAACACAGGGCTATCCATGGACTGTCTCACTGAGCGTGGACATCAGGATGGGTGGCAGGATGCCATCTTTTCTTACAATCTttgatttaaagtaaaataaatattcaaaatgaagGGTTTCTATATAGTTTTCATGCTTGCTCCTCCAGTTAGGTAGAAGTTCCGGAACTGCAGGGTGACTGAACTGCCATTGTGATTAGATGGCATGAGGTTTGTTTTACACAGTCTCGGGGGGGGGGCGATTTAACACTGGCTTTCCTTGCTTTGGTGTTTAAGCAAAGTCTATCAATTATCTATTGAATCTCTGTCCTTTTCCATGGAGAATTCAAAAGTTTGGCAACACTTTACCTTAAATGGGCAACGATTCTTCATgatgagttctgatgttgaacACATGTATCATCCCTGACCCCAAACCTAGtctgtaaccctgaccctaaccttgttatacttgtgattaacagcagaactcacaTTAAGTgcataatgtattcatgtgttattcctgggGGATTCATACATCAATTCCTTGAGAACTGGAGCCCACTATTGTCAGATATGACAACAAGTTTAAGCCTATTGTTTCTAATTTGAATGAGATTCTACCTCTTGCTGAAAGGTACTGATGTATAAGTGTGAACAGTGTAGACTGACAGTAGCTATATCTGGTCTGTATATCAACTGCTTGGAAAAGGACTGATGTAGCAAAAGAAAcccaagtgtttttttattttaacactttattttaagtgtttttttgtatgcagCCCTCTACAAAATCTGAAGGAATTTCTGTCTATGTGGCCTGTTTGCATATAcgacattttattttcagttgtagACGCCTGTTCATTGGTGCCACAACAGGGCCAGTTTGGGGAATAAACACTGTGTTTCCTTCCCATCATGCCTTCCTGTTATAGAGGCATCCAACTCGGCCTGCCCTCACAGTGAGACCACTGTGGTCCTCAGGTGGCGTCATGATATCTGTGACACAGGAAGACTCCAGGGGATGGGAAGCCAAGTGTTTACACTCATTCTTACACTATTGTGGCAGTGATAAATGGACTTTAAGCAAGGACAGCTAAATATGGAGCCTGTAAAACACAAAGGTGTTGATTGAAAAATGACACAGGACTCATGAGAATGTTATGCAAATGAAAGGTAAGATCCTTTTCTAGTTTTTTGCATTACTAACAGAAAGTAAAGTGGAGAGACTTGCTGAGTGGTGAACGGTTGATCCTAATGCAAACGAGACAAAACCTTTCAAAAGTATGCAAATTCCCAGATGAACTGATTGATATGGGTCTATGAAAAGGAAGTATTGGGCAAACAAACTGTCAACCAGACTCTGCTAAACATCACATCCTGGCGTGGCCTCACAGTGCCGAAGACACCTTTAAGGTTTTCTAAGGAAAGCAAATTGCACTGAGAAGCCAAGACCCACATATCCTCTGTCTCCATGAGGGAGCAGTGCTGTCTACTGCCTGTAGTATTGATGTCTTTATGTAGGGgcacattaaatgcattaaatgctTTGAAGATTAAGCAAAAAATCTTCttcaaat
>TU51380
tgtgtatatatatatatatatatatattcaaaatgaagGGTTTCTATATAGTTTTCATGCTTGCTCCTCCAGTTAGGTAGAAGTTCCGGAACTGCAGGGTGACTGAACTGCCATTGTGATTAGATGGCATGAGGTTTGTTTTACACAGTCTCGGGGGGGGGGCGATTTAACACTGGCTTTCCTTGCTTTGGTGTTTAAGCAAAGTCTATCAATTATCTATTGAATCTCTGTCCTTTTCCATGGAGAATTCAAAAGTTTGGCAACACTTTACCTTAAATGGGCAACGATTCTTCATgatgagttctgatgttgaacACATGTATCATCCCTGACCCCAAACCTAGGCTGTG
>TU51381
tgtgtatatatatatatatatatatattcaaaatgaagGGTTTCTATATAGTTTTCATGCTTGCTCCTCCAGTTAGGTAGAAGTTCCGGAACTGCAGGGTGACTGAACTGCCATTGTGATTAGATGGCATGAGGTTTGTTTTACACAGTCTCGGGGGGGGGGCGATTTAACACTGGCTTTCCTTGCTTTGGTGTTTAAGCAAAGTCTATCAATTATCTATTGAATCTCTGTCCTTTTCCATGGAGAATTCAAAAGTTTGGCAACACTTTACCTTAAATGGGCAACGATTCTTCATgatgagttctgatgttgaacACATGTATCATCCCTGACCCCAAACCTAGtctgtaaccctgaccctaaccttgttatacttgtgattaacagcagaactcacaTTAAGTgcataatgtattcatgtgttattcctgggGGATTCATACATCAATTCCTTGAGAACTGGAGCCCACTATTGTCAGATATGACAACAAGTTTAAGCCTATTGTTTCTAATTTGAATGAGATTCTACCTCTTGCTGAAAGGTACTGATGTATAAGTGTGAACAGTGTAGACTGACAGTAGCTATATCTGGTCTGTATATCAACTGCTTGGAAAAGGACTGATGTAGCAAAAGAAAcccaagtgtttttttattttaacactttattttaagtgtttttttgtatgcagCCCTCTACAAAATCTGAAGGAATTTCTGTCTATGTGGCCTGTTTGCATATAcgacattttattttcagttgtagACGCCTGTTCATTGGTGCCACAACAGGGCCAGTTTGGGGAATAAACACTGTGTTTCCTTCCCATCATGCCTTCCTGTTATAGAGGCATCCAACTCGGCCTGCCCTCACAGTGAGACCACTGTGGTCCTCAGGTGGCGTCATGATATCTGTGACACAGGAAGACTCCAGGGGATGGGAAGCCAAGTGTTTACACTCATTCTTACACTATTGTGGCAGTGATAAATGGACTTTAAGCAAGGACAGCTAAATATGGAGCCTGTAAAACACAAAGGTGTTGATTGAAAAATGACACAGGACTCATGAGAATGTTATGCAAATGAAAGGTAAGATCCTTTTCTAGTTTTTTGCATTACTAACAGAAAGTAAAGTGGAGAGACTTGCTGAGTGGTGAACGGTTGATCCTAATGCAAACGAGACAAAACCTTTCAAAAGTATGCAAATTCCCAGATGAACTGATTGATATGGGTCTATGAAAAGGAAGTATTGGGCAAACAAACTGTCAACCAGACTCTGCTAAACATCACATCCTGGCGTGGCCTCACAGTGCCGAAGACACCTTTAAGGTTTTCTAAGGAAAGCAAATTGCACTGAGAAGCCAAGACCCACATATCCTCTGTCTCCATGAGGGAGCAGTGCTGTCTACTGCCTGTAGTATTGATGTCTTTATGTAGGGgcacattaaatgcattaaatgctTTGAAGATTAAGCAAAAAATCTTCttcaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51379 True 1888 lncRNA 0.41 7 15260868 15285288
TU51380 False 350 lncRNA 0.40 3 15237287 15283968
TU51381 False 1491 lncRNA 0.40 4 15237287 15285288

Neighbor

gene id symbol gene type direction distance location
AMCG00012957 NA coding upstream 12774 15212988 ~ 15224513 (+)
AMCG00012953 NA coding upstream 85464 15145480 ~ 15151823 (+)
AMCG00012950 ing3,LOC106576172,LOC106609303 coding upstream 160409 15067090 ~ 15076878 (+)
AMCG00012951 NA coding upstream 188442 15043019 ~ 15048845 (+)
AMCG00012952 kcnd2,LOC108412901,LOC107658801,LOC107744998 coding upstream 261465 14974710 ~ 14975822 (+)
AMCG00012963 cog5,LOC106609192 coding downstream 135555 15420843 ~ 15475870 (+)
AMCG00012972 NA coding downstream 240746 15526034 ~ 15531609 (+)
AMCG00012974 NA coding downstream 260347 15545635 ~ 15554052 (+)
AMCG00012980 NA coding downstream 330969 15616257 ~ 15618444 (+)
AMCG00012983 NA coding downstream 346138 15631426 ~ 15639738 (+)
G41184 NA non-coding upstream 70818 15160436 ~ 15166469 (+)
G41158 NA non-coding upstream 282248 14926325 ~ 14955039 (+)
G41096 NA non-coding upstream 500626 14735821 ~ 14736661 (+)
G41092 NA non-coding upstream 508838 14728182 ~ 14728449 (+)
G41084 NA non-coding upstream 532102 14704960 ~ 14705185 (+)
G41230 NA non-coding downstream 53 15285341 ~ 15287816 (+)
G41265 NA non-coding downstream 195403 15480691 ~ 15483321 (+)
G41282 si:dkey-180p18.9,akr1b1,LOC107729832,LOC107690495,LOC107587162,LOC107725652 non-coding downstream 270858 15556146 ~ 15559305 (+)
G41303 NA non-coding downstream 434219 15719507 ~ 15722866 (+)
G41325 NA non-coding downstream 573776 15859064 ~ 15859370 (+)
AMCG00012954 NA other upstream 100558 15081419 ~ 15136729 (+)
G41059 NA other upstream 603874 14632357 ~ 14633413 (+)
AMCG00012940 LOC107748465 other upstream 707481 14516783 ~ 14529806 (+)
G40999 metap2,LOC108428789,LOC100194705 other upstream 804086 14428313 ~ 14433201 (+)
G40629 NA other upstream 2701358 12488575 ~ 12535929 (+)
AMCG00012961 NA other downstream 12674 15297962 ~ 15317344 (+)
G41264 hbp1,LOC108230206,LOC107701066 other downstream 191891 15477179 ~ 15818342 (+)
AMCG00012973 NA other downstream 281205 15566493 ~ 15569943 (+)
AMCG00012978 NA other downstream 285618 15570906 ~ 15573468 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other downstream 335447 15620735 ~ 15631003 (+)

Expression


Co-expression Network