AMCG00012974


Basic Information

Item Value
gene id AMCG00012974
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15545635 ~ 15554052 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012974
AGAGAGCCTCCAATTCACGCTGGTGGTGGAGGTGGTTTATTAGTATACAAACTTTCTGCCACAGTTAGTGTTTGTGAGAAGCTGCTGCTACATCACCCCACCCTGTTTCTGTCCCAGAATGAATGACATGAACCTGAGCCCAGTGGGGATGGACGCACTAAGTGTGTCCTCTGTGACTGGAGCCATTCCCGTGGGCTCTGGGCACCTGGGCCTGCCAGCTTCGCCCACTCACAATGCCATCACCACAACAGGCATGCCAGTGGCAATCCCGAATCTGGGGCCTTCCTTGGGTTCCTTGCCTTCTGCCCTCTCTCTCATGTTGCCCATGGGGCCTATCGGAGAGAGGAGTGTTATGTGTGGCATCCCAGAGAGGAATTACACACTCCCGCCTCCTCCCTACCCCCACCTGGAGGGCAGCTACTTCAGACACATCTTGCCTGGTATTTTGTCATACCTGGCTGATAGACCACCGCCGCAGTACATTCACCCCGGCACCCTCAACATGGACACTTCCCTCCCCGGGCCCAGCAACCCCTCCTCCATTGACCCCTACCAGTCTGGCGGGGCAGTGGGACTGGAGCCCAGCATGGTAGCTCTGGACTCCCGGCAGGTGGGTGCCCATGGGGGCTCCAGCCTCCATCAGGGCGGCGGCCACGAGCTGGATGGGGGCCTGTCCCTGGGCTCACGGGGGGCCAGCCCCATCTCCCCGGACAGTATGGGCGGAGACATGGCGATGGACAGGGTGGTGGCTGAGTCGCAGCAGCTCAGTGGGAGCTCCAGGAGCCACGAGGGGCTGGGGGTGGACTCGGGGGGGATGTCGTCCGAGGCCCACGCAGGTGTCATCCCCCTGCATGCAGGGGGGCTGGAGCTACCTGTTGTCATGGAAGCAGAGCATCTGGGAGGCAGGGTCTCCGACGGCGGTTTGGGGGAGCCCCTGCACTCAGTGGCGATGAGCTCGGGCTCCGTCAGCGTGGTGCTGTCCAGCGCCCACCCCATCACCCCTCTGGAACCCGTGTCCATTCACAGCTCCAACATGGGCATGGAGGCAGTCACTGTGTCCCCAATCACTGCCGAGGTGTCTCTGGGCCCCGATAACCTGCTGCTCGTCCCCTCATCTCTGCAGCTGGAGGACTCCAACTCCAATAAAGAGAACATGGCCACCTCCTTCACCATTTGGTGCACCCTGTGTGATCGGTCCTACCCCTCAGACTGCCCCCAGCACGGCCCTGTCACCTTCATCCCTGACTCGCCCATTGAGAGCCGCGCCAGGCTGTCTGTGCCCCGGCAGCTCGCCCTTAGAGCCTCTGTCATCGGGGAGGACGCCGGTGTGTTTGCACGAGAGCCTATTCCTGTGAGGACCTGCTTTGGGCCAATGGTAGGGCAGCACTGTAGCTCTTTAGATGTCTCTGACTGGTCAAACAAGACTCCTCACAACATCTGGAAGATGTTCCACGACAACGTTCTGGAGTTCTACATTATAACTGCAGATGAGAATGAATGCAACTGGATGATGTTTGTTCGCAAAGCAAGAAGTGGCGAGGAGCAGAATCTTGTAGCTTACCCTCATAATGGGAAGCTGTATTTCTGCTCGTCGAGGGAGATTTTGCCCGACCATGAGCTCCTCTATTACTACAGTAGAGACTATGCCAGGCAGATGGGTGTTCCCGAAGTGCCAAACGCACATGTCTGTCACTGTGGCAAGGAATGTGCGTCCTACACAGACCTGAAGTCCCATCTGGGCAGTCACAGTCAAGCCCACAGTCCCCCCCCGGCCCATGGCATTAAGCTGGGAGGTGGCCACTGGCCTGGTCATACCAGAGAGAAGAAGTTCAAGTGCAGCATGTGCTCTCGGGCGTTTGCGTCATCCACGAAACTCAATGTGCACTTTATGGGACATGTGGGCATGAAGCCCCACAAGTGTGACTTCTGCAGCAAAGCTTTCAGCGACCCGAGCAATCTCAGGACACACCTGAAAATCCACACAGGACAAAAGAACTACAGGTGTACCATTTGTGAGAAGTCGTTCACACAGAAGGCTCACTTGGCATCGCACATGGTCATCCACACGGGCGCCAAGAACTTGAAGTGCGACCACTGTGACAAGATGTTCATGCGGAGGCAGGATCTCAAACAGCACGtgctcactcacacacaGGAACGACAGAAGAAGTGCCCTAAATGTGATAAACTCTTCTGGCGGACAAACCACTTGAAGAAACACCTGAACTCTCATGAAGGCCGGAGAGACTATATCTGCGAGAAGTGCACCAAAGCCTTCCTGACCAAGTACCACCTCACCAGACACCTGAAGATCTGCAAAGGGCCCAAGACAGGGGAATCGGTGCAAGACctggatgaggaggaggaggaggaagaggaagaggaggaggaggaggaggaggaagtaCACAGGTTGATTGAGCCATCTAGCCAGGAGACTTGTGGATTAAATGGTGGGGGATACACCACAGACAAAACTATTCCAAGGAACAAGTAACTGGACATCTGTGTCATACCATTGTGTTTgcatgcgttttttttttttgcttatttgtccctcttttttctcctcccttttcatgtattgtttttattaagttcACTTTTAACCATATGGTAACTATGGCAACTGCATTTGGCTGATTATCAAAGAGTATGAGTAAGGCAGAGGTTATGCATACGTCctcaaatatatatgatataatttGATCACTGTTGTTTGTCGAGACAtcaatttattcatttcattacTTTGTGTACCTGTTTTATGCAAGGGGGATGTATTCTGTGTAATACATCTCCCTGTCTTTGTTAGGGGAGCCCCTCCACTGCTGTGCTCCACTATGCATGGGGAAGTAACCAGACTGAGGTATTTCTCTCAGCTGGTTGATCACACaacttttaatttactttatttaatccCTGTAACACATTCAACActaatttaaaagtttattttttactagCCATGTGCAGAAACAGatgtttaatcaattaaattattttagtcATTCcttttgcagtgttttaaaaacatacaagacTGTTGCAGCTTCTAAAAATGTTGGTGGCAGTGTATAAGTAAAGAATCTGTGATTtgtccttcaaaaacaaaagcttcatgcttgtgtgtgtgtgttagtaacTCTAGGATCAGCTCCAGGTCCCACAGAATCCACAGCAGCAGAATGGCTGGGCAGCTCGACCCAGA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12463 PRDM4; PR domain zinc finger protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012974 True 3211 mRNA 0.52 10 15545635 15554052

Neighbor

gene id symbol gene type direction distance location
AMCG00012972 NA coding upstream 14026 15526034 ~ 15531609 (+)
AMCG00012963 cog5,LOC106609192 coding upstream 69765 15420843 ~ 15475870 (+)
AMCG00012960 NA coding upstream 266388 15274952 ~ 15279247 (+)
AMCG00012962 NA coding upstream 284710 15260248 ~ 15260925 (+)
AMCG00012957 NA coding upstream 321122 15212988 ~ 15224513 (+)
AMCG00012980 NA coding downstream 62205 15616257 ~ 15618444 (+)
AMCG00012983 NA coding downstream 77374 15631426 ~ 15639738 (+)
AMCG00012986 NA coding downstream 151546 15705598 ~ 15715080 (+)
AMCG00012988 sap30bp,LOC107725325 coding downstream 289801 15843853 ~ 15859012 (+)
AMCG00012991 NA coding downstream 317040 15871092 ~ 15912709 (+)
G41265 NA non-coding upstream 62314 15480691 ~ 15483321 (+)
G41230 NA non-coding upstream 257819 15285341 ~ 15287816 (+)
G41225 NA non-coding upstream 260347 15237287 ~ 15285288 (+)
G41226 NA non-coding upstream 281062 15248378 ~ 15264573 (+)
G41184 NA non-coding upstream 379166 15160436 ~ 15166469 (+)
G41282 si:dkey-180p18.9,akr1b1,LOC107729832,LOC107690495,LOC107587162,LOC107725652 non-coding downstream 2094 15556146 ~ 15559305 (+)
G41303 NA non-coding downstream 165455 15719507 ~ 15722866 (+)
G41325 NA non-coding downstream 305012 15859064 ~ 15859370 (+)
G41469 NA non-coding downstream 519462 16073514 ~ 16074099 (+)
G41484 NA non-coding downstream 567391 16121443 ~ 16124871 (+)
AMCG00012961 NA other upstream 228291 15297962 ~ 15317344 (+)
AMCG00012954 NA other upstream 408906 15081419 ~ 15136729 (+)
G41059 NA other upstream 912222 14632357 ~ 14633413 (+)
AMCG00012940 LOC107748465 other upstream 1015829 14516783 ~ 14529806 (+)
G40999 metap2,LOC108428789,LOC100194705 other upstream 1112434 14428313 ~ 14433201 (+)
AMCG00012973 NA other downstream 12441 15566493 ~ 15569943 (+)
AMCG00012978 NA other downstream 16854 15570906 ~ 15573468 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other downstream 66683 15620735 ~ 15631003 (+)
AMCG00012987 NA other downstream 228312 15782364 ~ 15791627 (+)
AMCG00013015 NA other downstream 1165303 16719355 ~ 16729533 (+)

Expression


Co-expression Network