AMCG00012905 (atp5c1,LOC107748457,LOC107675979,LOC107555824)


Basic Information

Item Value
gene id AMCG00012905
gene name atp5c1,LOC107748457,LOC107675979,LOC107555824
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12906385 ~ 12916433 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012905
TCGTCATCAAAACATGAGTTCCAAAGCGCAACGACAAGAGTCGTAACGATATCGCGAGATTGGGTGGGATCACGTGACGAAGGTTTGCGTCACAGCCTACGAGGCGCTCGGGTGTTGACGCGTGCGCAGTTTGTGGAGTCTGACCTTCATCGGAGTCACCATGTTCTCCCGAACCAGCGCTCTGGTCTTTCTGCCACAATGtgGCCAAGTCAGAAACATGGCTACGCTGAAGGACATCACCATTCGCTTGAAGTCCATCAAGAACATCCAGAAGATTACCAAGTCCATGAAGATGGTTGCTGCAGCCAAGTATGCCAGGGCTGAGCGCTCTCTGAAGCCGGCGCGTGTTTATGGGACCGGGGCCCTAGCCCTCTATGAGAAAGCCGATATCAAGGCTCCGGAGGACAAGAACAAGCACATTATTATTGGTGTTTCCTCCGACCGTGGCCTCTGCGGTGCCATTCACAGCAGTGTGGCCAAGGCCATGAAGTACGAGATTGGCAACCTGACCAGCGCTGGGAAGGAGGTCATGGTGGTTAGCATTGGGGACAAGCTGAGAGGTCTGCTCCACAGGACCCACGGAAATCACATGCTGTTGAATTTTAAGGAAGTGGGACGTAAACCCCCTACATTTGGGGATGCTTCCATAATTGCCACCGAACTGCTCAATTCGGGATATGAGTTTGACCAAGGCTCCATTGTTTTCAACCGGTTCAGGTCTGTAATTTCCTACAAAACCTCAGAGAAGCCGTTGTACTCTATTGATACCATTGCAAGTTCAGAAAACATGGGCATCTATGATGATATTGATGCTGATGTTCTGAGAAATTACCAGGAGTTTGCTCTGGTCAATATCATTTACTTCAGTATGAAGGAGTCCACCACCAGTGAACAGAGCGCCAGGATGACTGCCATGGACACTGAAATGATTGACAAGCTGACTCTTACATTCAACCGTACCCGTCAAGCCGTCATCACCAAAGAGCTTATTGAGATCATCTCTGGTGCTGCTGCTCTGATAGAGACCCTCCAGGGAGCCGGCGGGATGTGTGAGAGCTATGCCCGTTCGCTGCTGCGGGTGTCGGTGGCGCAGATATGCCAGGCGCTGGGCTGGGACTCAGTTCAGCTCACAGCCTGCGACCTCCTCACTGATGTTCTGCACAGGTATATCCAGCAGCTGGCCAGGGGCTGTCACCGGTACTCGGAGCTCTATGGCCGTACAGACCCAGTTTTAGATGATGTCGGACAGGCATTCAAGTTACTGGGAATAAACCTGAATGAGCTTGAAGACTATGTCCACAATCTTGAGCCGGTTGGCTTTGCTCATCAGATCCCCTTGTTTCCTGTCACCAAGAACAACATCCTGCAGTTCCCACAGGCTGGCAGCAAGGATGCCGAGGAGAGGAAAGAGTATATCCCCGAGTATATGCCTCCCATTGTGTCCTCACAAGAA

Function

symbol description
atp5c1 Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP biosynthetic process and ion transport. Located in mitochondrial inner membrane and myelin sheath. Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and sensory organ. Orthologous to human ATP5F1C (ATP synthase F1 subunit gamma).

NR:

description
ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02136 ATPeF1G, ATP5C1, ATP3; F-type H+-transporting ATPase subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012905 True 1453 mRNA 0.52 10 12906385 12916433

Neighbor

gene id symbol gene type direction distance location
AMCG00012904 NA coding upstream 5058 12884489 ~ 12901327 (+)
AMCG00012900 NA coding upstream 39328 12840241 ~ 12867057 (+)
AMCG00012897 NA coding upstream 278808 12618767 ~ 12627577 (+)
AMCG00012896 LOC107580939 coding upstream 297184 12593885 ~ 12609201 (+)
AMCG00012895 NA coding upstream 353315 12517928 ~ 12553070 (+)
AMCG00012903 taf3 coding downstream 43915 12960348 ~ 12976980 (+)
AMCG00012908 gata3 coding downstream 78157 12994590 ~ 13014587 (+)
AMCG00012910 celf2,LOC106927059,LOC103382440,LOC107092344,LOC106576215,LOC106609337 coding downstream 797889 13714322 ~ 13743896 (+)
AMCG00012911 NA coding downstream 834716 13751149 ~ 13760598 (+)
AMCG00012909 LOC106927059 coding downstream 857357 13773790 ~ 13785856 (+)
G40710 NA non-coding upstream 163691 12741174 ~ 12742694 (+)
G40643 NA non-coding upstream 384566 12521463 ~ 12521819 (+)
G40604 NA non-coding upstream 554657 12350850 ~ 12351728 (+)
G40571 NA non-coding upstream 711699 12194485 ~ 12194686 (+)
G40555 NA non-coding upstream 1161590 11744596 ~ 11744795 (+)
G40776 LOC107575789 non-coding downstream 198460 13114893 ~ 13115253 (+)
G40777 NA non-coding downstream 198879 13115312 ~ 13115532 (+)
G40788 LOC107575789 non-coding downstream 344211 13260644 ~ 13261179 (+)
G40824 NA non-coding downstream 966828 13883261 ~ 13885189 (+)
G40846 NA non-coding downstream 1070517 13986950 ~ 13988088 (+)
G40629 NA other upstream 370456 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 405983 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 2364425 10540728 ~ 10541960 (+)
G40224 NA other upstream 2461938 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 3776174 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 1511880 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 1600350 14516783 ~ 14529806 (+)
G41059 NA other downstream 1715924 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 2164986 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 2381529 15297962 ~ 15317344 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028792 atp5f1c coding NC_007115.7 CM002888.2 25173299 ~ 25181552 (-)
grasscarp (Ctenopharyngodon idella) CI01000019_01740386_01743210 ATP5C1, ATP5C1.L, MGC82276 coding CI01000019 null 1740348 ~ 1744864 (+)