RNA id: TU57869


Basic Information

Item Value
RNA id TU57869
length 577
RNA type TUCP
GC content 0.63
exon number 1
gene id G46418
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 40586816 ~ 40587392 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCCCTCAGCACCAGCACAGCCACCTCGCTGCCCACCGGGAGGTCCTTCAGGATATCCACCACCTGCGTGTGGGTCAGCGTCTGCACATTCTGCCGGTTGATCTCCTTTATGACGTCGCCCTTCAGCAGCCCCCGGCACCACTGGGCATCCAGGATCATCTTCACCTTCTGGCCCAGTGGGCAGTCGGCGATGGCAAAACCAAAGCCTGCGGGGCCCTTGACCAGGGGAACGGTCACCAGCTCGGGCTGCAGCAGTGTGGGGTCCTGCGGGTCGGGAAAGCGCCCGTTGGACACAGTGGACACCACCTGCCGCCCGCTGGCGTCCGTGGTGACGAAGTGCAGCTCCTGGGAGCTGTGCATGGCCTCGCCCTTCACCAGCAGCGGCTGCCCGTTGATGATGGGCACAGCCGTGACGATGTCACTGCCGCTAGGCTCGCTGCTGGTATCCTCGGGCAGCGGGTACCCCCGGCACAGCACCATGTCCACGTACTGGTTCACCGCGATGGACTGGAACATCTGCACAACATCGGCATGTGTCTTCCCCAGGACAGAGTTGCCGTTTATTTCCACAATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57842 lncRNA downstream 140422 40442310 ~ 40446394 (-) True G46395
TU57817 lncRNA downstream 168174 40416675 ~ 40418642 (-) True G46372
TU57807 lncRNA downstream 201058 40385349 ~ 40385758 (-) True G46370
TU57805 lncRNA downstream 204818 40381550 ~ 40381998 (-) True G46368
TU57688 lncRNA downstream 959626 39622363 ~ 39627190 (-) True G46263
TU57870 lncRNA upstream 5756 40593148 ~ 40593420 (-) True G46419
TU57871 lncRNA upstream 9966 40597358 ~ 40597898 (-) True G46420
TU57872 lncRNA upstream 13806 40601198 ~ 40601532 (-) True G46421
TU57881 lncRNA upstream 30951 40618343 ~ 40630486 (-) True AMCG00013732
TU57912 lncRNA upstream 395740 40983132 ~ 40983557 (-) True G46458
AMCG00013730 mRNA downstream 174182 40392893 ~ 40412634 (-) False AMCG00013730
AMCG00013723 mRNA downstream 681148 39900104 ~ 39905668 (-) True AMCG00013723
AMCG00013722 mRNA downstream 690354 39876427 ~ 39896462 (-) True AMCG00013722
AMCG00013716 mRNA downstream 730496 39855358 ~ 39856320 (-) True AMCG00013716
AMCG00013718 mRNA downstream 748508 39837346 ~ 39838308 (-) True AMCG00013718
AMCG00013732 mRNA upstream 34845 40622237 ~ 40637228 (-) False AMCG00013732
AMCG00013733 mRNA upstream 53684 40641076 ~ 40647148 (-) True AMCG00013733
AMCG00013737 mRNA upstream 297562 40884954 ~ 40888451 (-) True AMCG00013737
AMCG00013738 mRNA upstream 302337 40889729 ~ 40927189 (-) True AMCG00013738
AMCG00013742 mRNA upstream 405397 40992789 ~ 40995408 (-) True AMCG00013742
TU57809 other downstream 158191 40386061 ~ 40428625 (-) True AMCG00013730
TU57766 other downstream 311718 40273391 ~ 40275098 (-) True G46333
TU57492 other downstream 1803667 38782093 ~ 38783149 (-) False AMCG00013685
TU57455 other downstream 1885742 38697395 ~ 38701074 (-) True AMCG00013677
TU57301 other downstream 2103060 38478552 ~ 38483756 (-) False AMCG00013661
TU57875 other upstream 16209 40603601 ~ 40608528 (-) True G46423
TU58280 other upstream 2112114 42699506 ~ 42701068 (-) True G46742
TU58927 other upstream 5035846 45623238 ~ 45623895 (-) True G47261
TU59115 other upstream 5336530 45923922 ~ 45924348 (-) False AMCG00013882
TU59142 other upstream 5376499 45963891 ~ 45974311 (-) True AMCG00013883

Expression Profile