RNA id: AMCG00014312


Basic Information

Item Value
RNA id AMCG00014312
length 885
RNA type mRNA
GC content 0.56
exon number 11
gene id AMCG00014312
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8536937 ~ 8539049 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccgcccccccaccctccagcGTGGTGAACCAGCTAAAGCCCAAGGACCTGGACCACTTGGAGctatGTCTGGTTAAGCGCTTCTATGACTCCCAGCAAGCTCTAGACCTCAAGAGCATTGGCACTGACCCAGaCCTAGAGGATCAGAAGATCGTGGTGAACCTCAACAAGATGGGCGGCATGCAGGACATAAACAAGATCATCGCAGAGATCTTCCCTGAGctTGTCTCTCTGGACCTCAGCAATAATGGCCTGAACAAGCTGGACGAAATCTATGACCTAGTGAGCAAATCGCCCAACCTGAAGATCCTTAACCTCTCACACAACATGCTGAAGTCAGAGAGGGAACTGGACAAGGTGAAGGGCTTCAAGCTGCAGGAGCTGTGGCTGGAGCACAACCCCCTGTGTGCGCACTTCAAAGACCAGCTGTCCTAcatcagCGTCATCCGAGAGATGTTCCCCACACTGCTCAGGCTGgATGGCCATGTCCTCCCCAGGCCCACAGCGACTGAAGCTGAAAAACCAGCCGCACGCCCGGCCACCAAGGCCAATCACTCTGATGAGGAGGAGATCAAGCGCGTGATTCTGCCCTTCCTGCACGATTACTACAAAGTGTACGACTCAGGGGACAGACGGCCACTCATCGAGGCATACCACGACGGCGCATCCTTCGCCCTCAACATCCCGTTGACCTCCAGGCCCAGAGATTTCTATGGCTGCAACAGCAGGGAGCTGAAAGACCACACTACAGCCACATGGCTCCACCTGCGTAGGCGCACGCGCCAGGACGTGGCAGCCTTCCTGAACGATCTGCCCAAGACGCAGCACGACACCAGCTCCTTCGTGGTGGAAGTCAACGCATACACTGTGAGTGACCACCGACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86331 lncRNA downstream 286376 8226494 ~ 8250561 (-) True G69086
TU86291 lncRNA downstream 400743 8134903 ~ 8136194 (-) True AMCG00014297
TU86202 lncRNA downstream 662579 7874153 ~ 7874358 (-) True G68981
TU86117 lncRNA downstream 910562 7625985 ~ 7626375 (-) True G68905
TU86087 lncRNA downstream 1071275 7465409 ~ 7465662 (-) True G68875
TU86493 lncRNA upstream 351507 8890556 ~ 8890839 (-) True G69233
TU86513 lncRNA upstream 459377 8998426 ~ 8998626 (-) True G69250
TU86641 lncRNA upstream 810739 9349788 ~ 9355238 (-) True G69352
TU86667 lncRNA upstream 1050775 9589824 ~ 9590081 (-) True G69372
TU86668 lncRNA upstream 1052127 9591176 ~ 9591381 (-) True G69373
AMCG00014304 mRNA downstream 202485 8330056 ~ 8334452 (-) True AMCG00014304
AMCG00014305 mRNA downstream 210517 8322434 ~ 8326420 (-) True AMCG00014305
AMCG00014303 mRNA downstream 231756 8304531 ~ 8305181 (-) True AMCG00014303
AMCG00014302 mRNA downstream 275957 8259727 ~ 8260980 (-) True AMCG00014302
AMCG00014301 mRNA downstream 339312 8189023 ~ 8197625 (-) True AMCG00014301
AMCG00014310 mRNA upstream 62113 8601162 ~ 8615001 (-) True AMCG00014310
AMCG00014311 mRNA upstream 192529 8731578 ~ 8758181 (-) True AMCG00014311
AMCG00014317 mRNA upstream 491056 9030105 ~ 9040045 (-) True AMCG00014317
AMCG00014319 mRNA upstream 508255 9047304 ~ 9050642 (-) True AMCG00014319
AMCG00014320 mRNA upstream 521984 9061033 ~ 9085213 (-) True AMCG00014320
TU86412 other downstream 152713 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 378347 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 397811 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 1113646 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 1156157 7378088 ~ 7380780 (-) True AMCG00014271
TU86630 other upstream 771402 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 2257667 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 3120972 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 19790690 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 20850241 29389290 ~ 29398305 (-) True G72477

Expression Profile