RNA id: AMCG00014728


Basic Information

Item Value
RNA id AMCG00014728
length 864
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00014728
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28905901 ~ 28916634 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaGGATGAAGTCTATCTCAACCTGGTCCTGGACTACGTTCCTGAAACAGTATACAGAGTCGCCAGACATTACAGCCGAGCCAAACAGACACTCCCTATGATCTATGTGAagTTGTACATGTACCAGCTATTCCGGAGTTTAGCCTATATCCATTCCTTTGGAATTTGCCATCGGGACATCAAACCACAGAATCTGCTGCTGGACCCAGAGACAGCCGTACTCAAACTGTGTGATTTTGGAAGTGCAAAGCAGTTAGTCAGAGGAGAGCCCAATGTGTCCTACATCTGCTCGCGGTACTACAGGGCGCCAGAGCTGATTTTTGGCGCTACAGATTATACCTCTAGTATAGACGTCTGGTCAGCTGGGTGCGTGCTAGCCGAACTGTTGCTAGGACAACCGATCTTCCCTGGTGACAGTGGAGTGGATCAGCTGGTGGAAATCATCAAGGTCCTTGGCACACCAACAAGGGAACAGATTCGAGAGATGAATCCCAATTACACTGAATTCAAATTCCCCCAGATTAAGGCGCATCCATGGACTAAGGTCTTCCGGCCTCGCACCCCCCCGGAGGCCATCGCGCTGTGTAGCCGGCTGCTGGAGTACACGCCCACTGCCCGCCTCACCCCCCTGGAAGCCTGTGCGCACTCCTTCTTCGACGAGCTACGGGACCCAAATATTAAGCTACCAAATGGACGGGAGAAGCCCTCTCTCTTCAACTTCACCACTCAAGAGCTGTCCAGTAACCCCTCACTGGCCTCCATCCTGATCCCGGCCCACGCCCGCAGTCAGGCCGGAGCCTCCACTCCCACCAACGCCTCGGCCACCTCAGGTCAGGTGCACCCGCCCGGCAGCCTCCCCTCCTAA

Function

GO: NA

KEGG:

id description
K03083 GSK3B; glycogen synthase kinase 3 beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90400 lncRNA upstream 67991 28836282 ~ 28837910 (+) False AMCG00014729
TU90404 lncRNA upstream 73926 28831756 ~ 28831975 (+) True G72329
TU90338 lncRNA upstream 327168 28526788 ~ 28578733 (+) True G72273
TU90255 lncRNA upstream 564184 28337291 ~ 28341717 (+) True G72208
TU90212 lncRNA upstream 605088 28297669 ~ 28300813 (+) True G72173
TU90416 lncRNA downstream 2342 28918976 ~ 28921290 (+) True G72341
TU90428 lncRNA downstream 64488 28981122 ~ 28985576 (+) True G72353
TU90429 lncRNA downstream 72973 28989607 ~ 28991299 (+) True G72354
TU90496 lncRNA downstream 220495 29137129 ~ 29137353 (+) True G72409
TU90507 lncRNA downstream 240391 29157025 ~ 29160425 (+) True G72415
AMCG00014727 mRNA upstream 14933 28881917 ~ 28890968 (+) True AMCG00014727
AMCG00014729 mRNA upstream 67992 28797049 ~ 28837909 (+) True AMCG00014729
AMCG00014725 mRNA upstream 126611 28767435 ~ 28779290 (+) True AMCG00014725
AMCG00014726 mRNA upstream 139811 28695811 ~ 28766090 (+) True AMCG00014726
AMCG00014723 mRNA upstream 296714 28591078 ~ 28609187 (+) True AMCG00014723
AMCG00014734 mRNA downstream 179495 29096129 ~ 29110638 (+) True AMCG00014734
AMCG00014733 mRNA downstream 204317 29120951 ~ 29129042 (+) True AMCG00014733
AMCG00014739 mRNA downstream 331241 29247875 ~ 29256354 (+) False AMCG00014739
AMCG00014738 mRNA downstream 353004 29269638 ~ 29279149 (+) True AMCG00014738
AMCG00014737 mRNA downstream 391306 29307940 ~ 29321592 (+) True AMCG00014737
TU90214 other upstream 601828 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 1026101 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 1064030 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 6050255 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 10631541 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 934816 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 1847717 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 2061582 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 2062936 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 2073429 30990063 ~ 30996363 (+) True G72787

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073929 True 4420 mRNA 0.44 11 NC_007120.7 9577743 ~ 9671244 (-)
grasscarp (Ctenopharyngodon idella) CI01000037_04313204_04343186.mRNA True 1873 mRNA 0.48 11 CI01000037 4312626 ~ 4343186 (-)