RNA id: TU91485


Basic Information

Item Value
RNA id TU91485
length 212
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G73220
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 33070003 ~ 33070214 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caccaaaataacaaaaaaaataaaaactatgctCAGTCGCCTTGTGTTCTACATGCGTTCTCCGCGCGCGTTTGTGATAACGTAAGATGAACGCAAACGCACCAGGGTTCGATAGAATCAAGTCGAGTGTGAAACCAGACCAACGCTGCGGGGGGCGCCGGGAACAATATCGCCCGGGCTCGGACCGTAGCAAACGAGCCCATGTGAAAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91472 lncRNA upstream 263694 32804668 ~ 32806309 (+) True G73212
TU91410 lncRNA upstream 388198 32672511 ~ 32681805 (+) True G73158
TU91366 lncRNA upstream 494124 32575447 ~ 32575879 (+) True G73120
TU91345 lncRNA upstream 503107 32565793 ~ 32566896 (+) True G73104
TU91348 lncRNA upstream 505664 32558281 ~ 32564339 (+) True G73105
TU91514 lncRNA downstream 385397 33455611 ~ 33456414 (+) True G73247
TU91515 lncRNA downstream 385397 33455611 ~ 33645483 (+) False G73247
TU91527 lncRNA downstream 575710 33645924 ~ 33653699 (+) False G73257
TU91529 lncRNA downstream 575710 33645924 ~ 33725262 (+) True G73257
TU91534 lncRNA downstream 709009 33779223 ~ 33779473 (+) True G73261
AMCG00014822 mRNA upstream 301024 32758965 ~ 32768979 (+) True AMCG00014822
AMCG00014821 mRNA upstream 313866 32734868 ~ 32756137 (+) True AMCG00014821
AMCG00014817 mRNA upstream 406849 32653743 ~ 32663154 (+) True AMCG00014817
AMCG00014815 mRNA upstream 672495 32396687 ~ 32397508 (+) True AMCG00014815
AMCG00014812 mRNA upstream 814712 32242954 ~ 32255291 (+) True AMCG00014812
AMCG00014827 mRNA downstream 627309 33697523 ~ 33778248 (+) True AMCG00014827
AMCG00014831 mRNA downstream 1620871 34691085 ~ 34931860 (+) True AMCG00014831
AMCG00014833 mRNA downstream 1957643 35027857 ~ 35320982 (+) True AMCG00014833
AMCG00014835 mRNA downstream 2300770 35370984 ~ 35382903 (+) True AMCG00014835
AMCG00014836 mRNA downstream 2324096 35394310 ~ 35412072 (+) False AMCG00014836
TU91344 other upstream 508514 32542510 ~ 32561489 (+) True G73103
TU91144 other upstream 1315073 31717118 ~ 31754930 (+) True G72925
TU90967 other upstream 2073640 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 2089751 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 2091178 30978216 ~ 30978825 (+) True G72785
TU91511 other downstream 294541 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 1168720 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 1709908 34780122 ~ 34780590 (+) True G73329
TU91622 other downstream 1871797 34942011 ~ 34960447 (+) True G73343
TU91690 other downstream 2320420 35390634 ~ 35394649 (+) False AMCG00014836

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU368535 True 16527 lncRNA 0.38 3 CI01000110 2827126 ~ 2843829 (+)