RNA id: AMCG00015191


Basic Information

Item Value
RNA id AMCG00015191
length 1196
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00015191
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4295433 ~ 4300203 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGAGACGTGTCTTCACACTACATATCCCAGCGAGCACCGCGGCGCAGACCGCGGAAGCGGAACTGTGGAAATCAAAGTAGCGAGGGCTTGTTTTGGATGCTTCtcgtttttctcttttccttttgtttctctgccttttgacccccctccccctcagcgGAGACGGAGCGTATTCCCGACAGAGACGTCCAGGACATTTCTTACAGTGGAGAAAGAGAGTTTGTGAGGACAGAGGAGCCGCCATGAACCTGGAAAGAGTCCCGAACGAGGAGAAACTCAACCTGTGTAGAAAATACTACCTGGgagGGTTTGCGCTGCTGCCATTCCTGTGGCTGGTCAATGTCGTGTGGTTTTTCCGGGAGGCCTTCATGAAGCCGGCTTTCACCGAGCAACCTCTCCTCAAGACCTATGTGAAGAGGTCGGCAGTGGGGCTGTTACTCTGGGTGGCTGTTCTCACCACCTGGATCACTATCTTCCAGCACTCCAGAGCGCAGTGGGGCGAGGTGGGAGACTACCTCTCCTTCACCATTCCTCTTGGCatcccctaaaaaaaaaaaaaaaaaaaagtgtttgaggggagggtggtggtggggacAGAAGCAGCAGTGGAAgagagggtttttttttttttttttttttgtcaggtCTTTGTTGTGTGGCCCACGTGCCATTGCAGCTGGCAGTCATGGGTTCAGTCCCCAGAGGCCAATTGGTGTCTGTGCCCTGGGCTCCTGCTCCAGCCACAGTTAACTGGCTGCTGTGTCCAAACTCCCTCCCAGCAATCCCCTGTGGTCGTGTTCTTTTTGCCGGGAGGGGCCACGGCATGATCGTAATCGGGGGGGATTCAGGCCAATCGTGGAGGAAgctgagctgggctggaacaccATGATAAAGATTCTGCAGCCCCTTCCCTACAGGAACCGAGTTGCCTCCACTTCCCGTCCCCGACATTCCTTCCTGTTATCCTCTGAAGCAGACCCTGCCCCTACTACATTCGGTTTATTGTATGCAGtagtgtattataatatattttacatgccctgctgtactTTAATGACCTTCTTGATCTTATGTCAGTCCTGGTGCTAGACACCCCTTGATTTTTTGGCTTGGATTGCAGATGAGCTCTCAGTTACCTAGTGGAAGCCTTAATTGAAATCCCGGATTGATAGAGAGGATTTTTCAACTGCGTTC

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06170 PSENEN, PEN2; presenilin enhancer 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119865 lncRNA downstream 39949 4251882 ~ 4255484 (-) True G96115
TU119860 lncRNA downstream 78539 4215727 ~ 4216894 (-) True G96110
TU119835 lncRNA downstream 171470 4112256 ~ 4123963 (-) True AMCG00015180
TU119735 lncRNA downstream 256215 3967029 ~ 4039218 (-) True G96010
TU119876 lncRNA upstream 1429 4301632 ~ 4301940 (-) True G96125
TU119878 lncRNA upstream 14490 4314693 ~ 4314916 (-) True G96127
TU119879 lncRNA upstream 15994 4316197 ~ 4316936 (-) True G96128
TU119881 lncRNA upstream 20835 4321038 ~ 4321271 (-) True G96130
TU119882 lncRNA upstream 28893 4329096 ~ 4329398 (-) True G96131
AMCG00015192 mRNA downstream 2136 4290597 ~ 4293297 (-) True AMCG00015192
AMCG00015187 mRNA downstream 13804 4275770 ~ 4281629 (-) True AMCG00015187
AMCG00015186 mRNA downstream 38090 4256267 ~ 4257343 (-) True AMCG00015186
AMCG00015188 mRNA downstream 85904 4206275 ~ 4209529 (-) True AMCG00015188
AMCG00015177 mRNA downstream 110914 4181952 ~ 4184519 (-) True AMCG00015177
AMCG00015194 mRNA upstream 65233 4365436 ~ 4371175 (-) True AMCG00015194
AMCG00015193 mRNA upstream 108282 4408485 ~ 4424905 (-) True AMCG00015193
AMCG00015195 mRNA upstream 136342 4436545 ~ 4452947 (-) True AMCG00015195
AMCG00015199 mRNA upstream 319161 4619364 ~ 4630222 (-) True AMCG00015199
AMCG00015202 mRNA upstream 370501 4670704 ~ 4679051 (-) True AMCG00015202
TU119841 other downstream 114992 4174879 ~ 4180441 (-) True G96094
TU119671 other downstream 688241 3604603 ~ 3607192 (-) False AMCG00015164
TU119619 other downstream 944991 3349879 ~ 3350442 (-) True G95921
TU119528 other downstream 1098244 3196421 ~ 3197189 (-) True G95854
TU119524 other downstream 1106340 3186169 ~ 3189093 (-) True G95850
TU119954 other upstream 317508 4617711 ~ 4619264 (-) True G96191
TU119993 other upstream 478190 4778393 ~ 4802904 (-) True AMCG00015203
TU120086 other upstream 667847 4968050 ~ 4976350 (-) True AMCG00015210
TU120088 other upstream 685369 4985572 ~ 5005512 (-) False AMCG00015211
TU120090 other upstream 685369 4985572 ~ 5005512 (-) False AMCG00015211

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU159894 True 1286 lncRNA 0.49 9 CI01000027 5118468 ~ 5164862 (+)
tiger barb (Puntius tetrazona) TU159894 True 1025 TUCP 0.43 4 NC_056713.1 20247202 ~ 20249972 (+)