RNA id: TU159894


Basic Information

Item Value
RNA id TU159894
length 1025
RNA type TUCP
GC content 0.43
exon number 4
gene id G108245
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20184120 ~ 20249972 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCATCATGCACCACAATGGAGTGACGTCACGCCATAGTTTTCATCAGGAAGCGGAACCATAAAAGTTGTTTCCCCCTCGCCTTTGTTGTGTTAAACCCTCCGTTTTCTCGTCTGAGCTCGGCTTTTAAGGAAACATTATGAACCTTGAACGGATTCCAAACGAGGAGAAGCTTAGCCTCTGCAGAAGATACTACTTGGGTGGCTTCGCTTTTCTCCCCTTCCTCTGGTTGGTGAACGTTCTGTGGTTTTTCAGAGAAGCGTTTTTAAAGCCCTCGTACACGGAGCAATCCCAAATAAAATCATATGTAAAGAGGTCTGCTCTGGGGCTCATAGTGTGGGTGGCTGTGCTGACGACGTGGATCACCATATTCCAGCATTTCAGAGCACAGTGGGGTGAGGTGGGAGACTACCTCTCCTTCACCATTCCCCTCGGCACAGCCTGATCACATCCCATGCGTTACCGTACCCGTTTCCATTTTGGCTATTTTTTCTCCTCCCATCGACAAGATGTTCCTCGGCTAATTTTACCACTGTCGTCGCATAGTCTGGATCTGTCTGGGAGTTGTGGTATTTTGTGGACCGATGAAATCGTTTTGTTGATCGAGTGACATAATATGGACACGAATGCACCATGCTAAAGCGCAGGAGTTTATTTCCAGCACTACTACTGCTTCTTATTTCCTGttccttttttctttagttttagcTGAGATGTTTGTTGTATTTGAGATCGCGCATTCACATTAACTCTGACCTCTGTCGATGCATTGAAAAGAATGTATGACAAAAATGATCTCCAGACCAGACAGGTCCATccaaaattttgtttttttggctgtGGATATGACGTGTAATATAATTGTTCTAAAAAAGGCTGATTTTCCTGCTATATATTAATCGTTTGGATGGACAGTAACATCACATATTTTGTCAGTACatataaaattgttttgcacaattttaaataaaattggaaAATATTCTGCAGTGCCGTTGCTTTTGTCGTGATTGTGGAATATGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159884 lncRNA upstream 14017 20170769 ~ 20233185 (+) True G108240
TU159916 lncRNA upstream 31723 20208170 ~ 20215479 (+) False LOC122359185
XR_006252691.1 lncRNA upstream 38543 20208170 ~ 20208659 (+) False LOC122359185
TU159874 lncRNA upstream 104830 20141805 ~ 20142372 (+) True G108231
TU159839 lncRNA upstream 191308 19998614 ~ 20055894 (+) True G108211
TU159926 lncRNA downstream 47416 20297388 ~ 20302209 (+) True G108256
TU160083 lncRNA downstream 70909 20320881 ~ 20321946 (+) True G108337
XR_006252704.1 lncRNA downstream 101625 20351597 ~ 20352384 (+) True LOC122359467
XR_006252695.1 lncRNA downstream 583522 20833494 ~ 20838578 (+) True LOC122359263
TU160196 lncRNA downstream 583698 20833670 ~ 20838566 (+) False LOC122359263
XM_043259610.1 mRNA upstream 42982 20198240 ~ 20204220 (+) True lin37
XM_043259609.1 mRNA upstream 56433 20188914 ~ 20190769 (+) True hspb6
XM_043258937.1 mRNA upstream 60341 20184067 ~ 20186861 (+) True psenen
XM_043258936.1 mRNA upstream 97385 20146188 ~ 20149817 (+) True igflr1
XM_043258934.1 mRNA upstream 106076 20127238 ~ 20141126 (+) True zbtb32
XM_043258684.1 mRNA downstream 2020 20251992 ~ 20253736 (+) True LOC122358795
XM_043258683.1 mRNA downstream 11755 20261727 ~ 20267188 (+) True LOC122358794
XM_043259831.1 mRNA downstream 67574 20317546 ~ 20334995 (+) True LOC122359506
XM_043259833.1 mRNA downstream 67574 20317546 ~ 20334671 (+) False LOC122359506
XM_043259834.1 mRNA downstream 67574 20317546 ~ 20332892 (+) False LOC122359506
TU159917 other upstream 37876 20208170 ~ 20209326 (+) True LOC122359185
TU159862 other upstream 55748 20189033 ~ 20191454 (+) False G108230
TU159893 other upstream 60341 20184120 ~ 20186861 (+) False G108245
TU159761 other upstream 472817 19721284 ~ 19774385 (+) True si:dkey-262k9.2
TU159763 other upstream 472817 19743371 ~ 19774385 (+) False si:dkey-262k9.2
TU160236 other downstream 961838 21211810 ~ 21214493 (+) True G108431
unassigned_transcript_2153 other downstream 1002770 21252742 ~ 21252815 (+) True trnai-aau_69
unassigned_transcript_2155 other downstream 1003505 21253477 ~ 21253548 (+) True trnaw-cca_2
unassigned_transcript_2157 other downstream 1004962 21254934 ~ 21255005 (+) True trnag-ucc_4
TU160418 other downstream 1474583 21724555 ~ 21726174 (+) False LOC122358705

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU584976 True 96 TUCP 0.39 1 CI01000352 146514 ~ 146609 (+)
bowfin (Amia calva) AMCG00015191 True 1196 mRNA 0.52 5 CM030132.1 4295433 ~ 4300203 (-)