RNA id: XM_043258936.1


Basic Information

Item Value
RNA id XM_043258936.1
length 1997
RNA type mRNA
GC content 0.43
exon number 8
gene id igflr1
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20146188 ~ 20149817 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGAAAGGACAGATCAGTAATGTCATATCGCCCTTGGCATCTATATTATAAGCGTAATCAGCCCTCTGTCAGATTACACCATTTTGAGATTAAGGCTGTGTCTGAAATGACACAATGGTGGTTTGATCTATGGACACAAGTTCACAACCCACCCAACTATTTCTCAAAACAGTCTGGCTTTCGCACGTCTCTGACATTACCTCAGTGCAGCCACACCAAGAACACGCACACGACCTCAGCCTCAATGACTTCAAAAAAGTGCATGAAAGGGCTGTTCTTTAATAGTTTTCGCTACCAATGTCAGACGTGCGATTCTAAATACGACATCAAAAAAGGTTACGAATTTGCCGACAACTGCGGATGGTCCGACGAGCAACAGCAGATCGAGTCGCCTTACAGACCATGCAGAGATGGGACATTTAACGATGGATCAAAAGTCGAGTGCCAAAACTGTAGATTTTGCCCAGAGCCACGGTTTGTTGCGTCTCCGTGTAAAAGCACTTCGGATACCATCTGCTGTAAACAAGGagaGCAGTATTTTAATGGAAGTTGTATCCCCGAGCCGCCGAAGACCACAAGGATAACGACTACAAGTAGGGCTATCAACATTACCTCAGTCACCAGCTCCAGCCCCTCTTCAGGCCCCTCTTCGGAACCCTTTCCAAGCTCGCAAAACCCTGTTCCAACACTTCAAAGCTTTGGCTTCAATAACTCTTCAAGTGCAGGGCCTCATTCATATTTCATTGGGATCTATGTGTTTTGTGGAATTTTATCAACACTCGCTCTGGTGTGTGTCTTCCTTTTGTTCAGGAGGAacactaaacattttaataaagatctaaaaaaatgctgtaatggaGCAAGTCATGAAAGCCTGTCCAAAATGAGCATTGCTAGATATAAACAGAGCGTCTCATACAGCATCATCAACGATGGCAATAATGATAATGTAACGGGATCGTCACGCTTAGCCCCTGAGGTCCAGAATGCACCTCTGAAAACGGTGCTGAACAACTTGGATGTTCTTGAGGAGCTCGTGGTGATATTAGACCCGGACATTTCTGGCGCCAAGAACACTCGGCACCTTGCTGCCCAGTGCTCTTTTTCATTTGCCTGGATAAATTATGCATATTCCATGAAGGACCACAAGAGCCCCCTTGTTGCCGTTTTGGAGGGCGTCGTCACCAAGAACCCAGACTGGACTGTCGGCCACCTCGTCGAGCTGCTAACTGCTATTGGCCGTAACGATGCAATGGAGATTTTGGCAAAGCTTCCTGCGCAAATCACAGATCAGTAAATTTACTTTAACTCGATTGTTGAACACAATCTCATAAGAATTCGTGAAtttcactgacacacacacacttataagTGACGGGAGGAGCAAACGTCAGTGTGCTCTGCATTTACCTGACGAGGCTTGATTCACGTCAGGTGTTCCTCAtcccacgcccctcctctcacaCGCACCCAGTCCTTttgggagcctggtgaagggtgACAGTTGTTGAAGTACGCAGTGCTTGAATCATGCATTTAGATTGACTGACtgtcttgggaaaaaaaaaaaaaaaaaaacacaatctaaACAGTTCACAGTGGAAAACATATGTCTGGACTCAGCTTGGGAATTTCCCCTAACGTTTTCTATTACATCCTACTTCACCCAGTACGACACATTTAGCCTTATATAGCCAATATGAAACGCAACACTGCCTAACACTATTTACATTCAACAAGTTTAATTTGTTCCTTTCTTTTCCTCCCTAAACATTCCATTTTTTATTACTGGATTTCATAACCCAGAAGTGTCTTTTtcttctaatgtttttttataagtGCCATAAATCAAAAGTTAGCAAACCAATATTGCAATTACTCAATATCTTGACTGGCTTTGTTTACAAATCCTTTCTGAAAGCAGTGCATCATTAGtacaccattttttttgtatagtcAGCATAAATATCACAATAAACCTTGAACTTTGTTCAAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159874 lncRNA upstream 3816 20141805 ~ 20142372 (+) True G108231
TU159839 lncRNA upstream 90294 19998614 ~ 20055894 (+) True G108211
TU159846 lncRNA upstream 129559 20014813 ~ 20016629 (+) True G108217
TU159835 lncRNA upstream 231745 19914149 ~ 19914443 (+) True G108207
TU159771 lncRNA upstream 410293 19731418 ~ 19735895 (+) True G108155
TU159884 lncRNA downstream 20952 20170769 ~ 20233185 (+) True G108240
XR_006252691.1 lncRNA downstream 58353 20208170 ~ 20208659 (+) False LOC122359185
TU159916 lncRNA downstream 58353 20208170 ~ 20215479 (+) False LOC122359185
TU159930 lncRNA downstream 89550 20239367 ~ 20294956 (+) False G108257
TU159932 lncRNA downstream 89550 20239367 ~ 20294956 (+) False G108257
XM_043258933.1 mRNA upstream 5062 20126733 ~ 20141126 (+) False zbtb32
XM_043258934.1 mRNA upstream 5062 20127238 ~ 20141126 (+) True zbtb32
XM_043258229.1 mRNA upstream 39620 20104530 ~ 20106568 (+) True LOC122358429
XM_043258231.1 mRNA upstream 44084 20100720 ~ 20102104 (+) True LOC122358430
XM_043258230.1 mRNA upstream 44084 20100720 ~ 20102104 (+) False LOC122358430
XM_043258937.1 mRNA downstream 34250 20184067 ~ 20186861 (+) True psenen
XM_043259609.1 mRNA downstream 39097 20188914 ~ 20190769 (+) True hspb6
XM_043259610.1 mRNA downstream 48423 20198240 ~ 20204220 (+) True lin37
XM_043258685.1 mRNA downstream 97361 20247178 ~ 20249733 (+) True LOC122358796
XM_043258684.1 mRNA downstream 102175 20251992 ~ 20253736 (+) True LOC122358795
TU159761 other upstream 371803 19721284 ~ 19774385 (+) True si:dkey-262k9.2
TU159763 other upstream 371803 19743371 ~ 19774385 (+) False si:dkey-262k9.2
unassigned_transcript_2152 other upstream 720999 19425117 ~ 19425189 (+) True trnav-aac_27
XR_006252666.1 other upstream 1150228 18993345 ~ 18995960 (+) True LOC122358990
TU159893 other downstream 34303 20184120 ~ 20186861 (+) False G108245
TU159895 other downstream 34303 20184120 ~ 20249972 (+) False G108245
TU159862 other downstream 39216 20189033 ~ 20191454 (+) False G108230
TU159863 other downstream 39216 20189033 ~ 20253742 (+) False G108230
TU159872 other downstream 39216 20189033 ~ 20254271 (+) True G108230

Expression Profile