RNA id: TU159895


Basic Information

Item Value
RNA id TU159895
length 997
RNA type TUCP
GC content 0.42
exon number 5
gene id G108245
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20184120 ~ 20249972 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCCATAGTTTTCATCAGGAAGCGGAACCATAAAAGTTGTTTCCCCCTCGCCTTTGTTGTGTTAAACCCTCCGTTTTCTCGTCTGAGCTCGGCTTTTAAGGAAACATTATGAACCTTGAACGGATTCCAAACGAGGAGAAGCTTAGCCTCTGCAGAAGATACTACTTGGGTGGCTTCGCTTTTCTCCCCTTCCTCTGGTTGGTGAACGTTCTGTGGTTTTTCAGAGAAGCGTTTTTAAAGCCCTCGTACACGGAGCAATCCCAAATAAAATCATATGTAAAGAGGTCTGCTCTGGGGCTCATAGTGTGGGTGGCTGTGCTGACGACGTGGATCACCATATTCCAGCATTTCAGAGCACAGTGGGGTGAGGTGGGAGACTACCTCTCCTTCACCATTCCCCTCGGCACAGCCTGATCACATCCCATGCGTTACCGTACCCGTTTCCATTTTGGCTATTTTTTCTCCTCCCATCGACAAGATGTTCCTCGGCTAATTTTACCACTGTCGTCGCATAGTCTGGATCTGTCTGGGAGTTGTGGTATTTTGTGGACCGATGAAATCGTTTTGTTGATCGAGTGACATAATATGGACACGAATGCACCATGCTAAAGCGCAGGAGTTTATTTCCAGCACTACTACTGCTTCTTATTTCCTGttccttttttctttagttttagcTGAGATGTTTGTTGTATTTGAGATCGCGCATTCACATTAACTCTGACCTCTGTCGATGCATTGAAAAGAATGTATGACAAAAAATGATCTCCAGACCAGACAGGTCCATccaaaattttgtttttttggctgtGGATATGACGTGTAATATAATTGTTCTAAAAAAGGCTGATTTTCCTGCTATATATTAATCGTTTGGATGGACAGTAACATCACATATTTTGTCAGTACatataaaattgttttgcacaattttaaataaaattggaaAATATTCTGCAGTGCCGTTGCTTTTGTCGTGATTGTGGAATATGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159874 lncRNA upstream 41748 20141805 ~ 20142372 (+) True G108231
TU159839 lncRNA upstream 128226 19998614 ~ 20055894 (+) True G108211
TU159846 lncRNA upstream 167491 20014813 ~ 20016629 (+) True G108217
TU159835 lncRNA upstream 269677 19914149 ~ 19914443 (+) True G108207
TU159771 lncRNA upstream 448225 19731418 ~ 19735895 (+) True G108155
TU159926 lncRNA downstream 47416 20297388 ~ 20302209 (+) True G108256
TU160083 lncRNA downstream 70909 20320881 ~ 20321946 (+) True G108337
XR_006252704.1 lncRNA downstream 101625 20351597 ~ 20352384 (+) True LOC122359467
XR_006252695.1 lncRNA downstream 583522 20833494 ~ 20838578 (+) True LOC122359263
TU160196 lncRNA downstream 583698 20833670 ~ 20838566 (+) False LOC122359263
XM_043258936.1 mRNA upstream 34303 20146188 ~ 20149817 (+) True igflr1
XM_043258933.1 mRNA upstream 42994 20126733 ~ 20141126 (+) False zbtb32
XM_043258934.1 mRNA upstream 42994 20127238 ~ 20141126 (+) True zbtb32
XM_043258229.1 mRNA upstream 77552 20104530 ~ 20106568 (+) True LOC122358429
XM_043258230.1 mRNA upstream 82016 20100720 ~ 20102104 (+) False LOC122358430
XM_043258684.1 mRNA downstream 2020 20251992 ~ 20253736 (+) True LOC122358795
XM_043258683.1 mRNA downstream 11755 20261727 ~ 20267188 (+) True LOC122358794
XM_043259831.1 mRNA downstream 67574 20317546 ~ 20334995 (+) True LOC122359506
XM_043259833.1 mRNA downstream 67574 20317546 ~ 20334671 (+) False LOC122359506
XM_043259834.1 mRNA downstream 67574 20317546 ~ 20332892 (+) False LOC122359506
TU159761 other upstream 409735 19721284 ~ 19774385 (+) True si:dkey-262k9.2
TU159763 other upstream 409735 19743371 ~ 19774385 (+) False si:dkey-262k9.2
unassigned_transcript_2152 other upstream 758931 19425117 ~ 19425189 (+) True trnav-aac_27
XR_006252666.1 other upstream 1188160 18993345 ~ 18995960 (+) True LOC122358990
TU160236 other downstream 961838 21211810 ~ 21214493 (+) True G108431
unassigned_transcript_2153 other downstream 1002770 21252742 ~ 21252815 (+) True trnai-aau_69
unassigned_transcript_2155 other downstream 1003505 21253477 ~ 21253548 (+) True trnaw-cca_2
unassigned_transcript_2157 other downstream 1004962 21254934 ~ 21255005 (+) True trnag-ucc_4
TU160418 other downstream 1474583 21724555 ~ 21726174 (+) False LOC122358705

Expression Profile