RNA id: XR_006252695.1


Basic Information

Item Value
RNA id XR_006252695.1
length 1620
lncRNA type inter_gene
GC content 0.47
exon number 5
gene id LOC122359263
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20833494 ~ 20838578 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtaatgacAGTCATACGTCATTTCATGACGACAGACTCAACGCGAcgctgtcattatttttacgtTGGCTATAGGGCGCTTaacttaatggaaaaaaaaaggcagggggtcactttaaatgtaattcacgAAATCAGAGGTAgactagtaaaaaaatatttcaccgctgatcagggttgccaggttttcacagcaaaaccCGCCCAAATACTACACGAATCGCTATTTGGGGCGGGGGGGATTGGGTATTGTCTGGGTTTCTTGAAAGTATCCCAATTCTGCTGATTCATTTCCCACCTAAAAATGCGGCACTGAAGAGTTTACCGTATCTAAAGTCACCCCTGCGTTCGTGTCGTGAAGACACCGGGATGCCAACGTGAGCAAAACAACCTACGTCTTCTGAGGGGCATGTTTTCCTGAGGGCCATGAAGTGACAGACAACTGACTACAGTCCCCAGACCTAATTCAATATGGAAATAAGCAGGGAGTTGGATGTATTTGCCAAATGATCAAGTAAACTGGATTGTCCTGGAAGACTAAGACTAGACTCAGCACTTCCCAGACCTAATTAATTACAGAGGGTGGAGTTGGAGGATGGATGCCAGAGGAGCTGTCTAAGGAGTAAGAACCAGAACAAGCCAACCCGTCCCCTGTGTGGTGtcgtcctcctcttctcctcctcctttgGTCTTCTGTTCCTTCGCCCTGTATTTCCCTCCCTCTGATGGATCCGGCCGCCCCGGTGCGCCACCAGACCAAAAAGCGAAAAGGGCAAGAAATTTGTCACCTTCCCCAACAAGACCCTCACCAGACAAAAGAACAACGGCATTAATCATCTGACATTTCAATATTGTATTACCCTTTCTAGTGAAAATCAAGGGGGTCATTAAACTGGTAAAAGGAGACGGGGTGCAGATCAATAGAACAAGCCTCGAACAGAACCTTGAGCTTTACTGCCGTCTGCAGATTCACAGCTGCTGTCAGTAGGTATGATAGGAGACAGCCTTAACTAATTACCTCTACGTGAAGGGCATGAAGTGGCGTTCAATGCATTGATGGCAGCAGTGAAGAGAACACTTAATCAGCAGGCAATGAATATAAACAGGCAAAGACCACCGGAGGGGAGCCCCTTGTTTGTGGTGCTGTTCTTGATGAGAGCCGATGGTAGCGTGAGGTTTTGTGTctgtaaaaacaacacacaGCCGAATTGCGTAGAGTATGTTGAAATGCTTTAGACGAGGGGAGAGTTTGAGAATGTGCCCTCCGAGTGCTTTCATGTTCTGCTTTTAGTACGTGGCACAGGGAAAGTTTTTCTTCGAGGATGAATTAAAAGGAGCGACAGGCTAATAGGGAGAGATACCTCAGTCGTTTCTCTTCGCTTTCACGAGCCTCTCCTGGCCGTTCACCCGTGTCTTCGTCATTCATCATCCTGCAATCGCGGCGTGTCTgttcagcaggtcgtttaactACGAAAACATGCCAATTTAGCCTGTTTGTGTGTTCGCGGACAACTTCAAACGCTGTTTGGACATGGTCAGTCATCGTGCCGTTTCGGTTTGGTAGCTGTCAGAGTTCAGGTCTGTGATTGTGGAGCTCTTAACAAAACAAAGTGATTAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252704.1 lncRNA upstream 481110 20351597 ~ 20352384 (+) True LOC122359467
TU160083 lncRNA upstream 511548 20320881 ~ 20321946 (+) True G108337
TU159926 lncRNA upstream 531285 20297388 ~ 20302209 (+) True G108256
TU159930 lncRNA upstream 538538 20239367 ~ 20294956 (+) False G108257
TU160192 lncRNA downstream 10144 20848722 ~ 20849915 (+) True G108394
TU160223 lncRNA downstream 233503 21072081 ~ 21190373 (+) True G108418
TU160232 lncRNA downstream 362809 21201387 ~ 21202509 (+) True G108427
TU160400 lncRNA downstream 778078 21616656 ~ 21617193 (+) True G108553
TU160403 lncRNA downstream 792751 21631329 ~ 21908852 (+) True G108555
XM_043259047.1 mRNA upstream 5579 20461144 ~ 20827915 (+) False robo2
XM_043259054.1 mRNA upstream 5579 20461144 ~ 20827915 (+) False robo2
XM_043259051.1 mRNA upstream 5579 20461144 ~ 20827915 (+) False robo2
XM_043259055.1 mRNA upstream 5579 20461144 ~ 20827915 (+) False robo2
XM_043259048.1 mRNA upstream 5579 20461144 ~ 20827915 (+) False robo2
XM_043259855.1 mRNA downstream 354473 21193051 ~ 21201218 (+) True cab39
XM_043259545.1 mRNA downstream 364271 21202849 ~ 21210105 (+) True itm2ca
XM_043258636.1 mRNA downstream 387574 21226152 ~ 21251420 (+) True ngef
XM_043258192.1 mRNA downstream 416605 21255183 ~ 21263444 (+) True efhd1
XM_043259808.1 mRNA downstream 446809 21285387 ~ 21295902 (+) True gal3st2
TU159872 other upstream 579223 20189033 ~ 20254271 (+) True G108230
TU159863 other upstream 579752 20189033 ~ 20253742 (+) False G108230
TU159895 other upstream 583522 20184120 ~ 20249972 (+) False G108245
TU159894 other upstream 583522 20247202 ~ 20249972 (+) True G108245
TU159917 other upstream 624168 20208170 ~ 20209326 (+) True LOC122359185
TU160236 other downstream 373232 21211810 ~ 21214493 (+) True G108431
unassigned_transcript_2153 other downstream 414164 21252742 ~ 21252815 (+) True trnai-aau_69
unassigned_transcript_2155 other downstream 414899 21253477 ~ 21253548 (+) True trnaw-cca_2
unassigned_transcript_2157 other downstream 416356 21254934 ~ 21255005 (+) True trnag-ucc_4
TU160418 other downstream 885977 21724555 ~ 21726174 (+) False LOC122358705

Expression Profile