RNA id: XM_043259048.1


Basic Information

Item Value
RNA id XM_043259048.1
length 7321
RNA type mRNA
GC content 0.51
exon number 31
gene id robo2
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20461144 ~ 20827915 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGGGAGGAAGGCAGAGTGCTTTGCCagttgtgtgtgagagagggcaGGAATTCCAACCGCGCGCAGACTATTCCAAGATCAGCTTCCCTCGTGCGCGGGAAATACATCGCCAATGCGTTTCCAAGCCTTTCTTTGAAGGTTCCCGCTGATGAAGTAACCAATGGTGTCATGGCCGCCAACCCGGACCGAGCGAGGTGTACCGCCGTCCTAGCTTGGCCTTCGCTCCTCCTCATTATCTGCGTCCTGTGGATCTTGTGCACAGACTCAGCCGGCGCTCAAGGGCAAGGATCCCGTCTACGGCAGGAAGATTCTCCACCTCGGATCGTAGAACACCCCTCCGATCTGATTGTATCCAAGGGCGAGCCAGCAACCCTAAACTGCAAGGCAGAGGGGCGGCCCACCCCTACCGTGGAGTGGTACAAAGATGGAGAACGAGTTGAAACTGATAAAGATGACCCTCGATCCCACCGCATGCTCCTGCCCAGTGGCTCACTCTTCTTCCTGCGCATCGTACACGGCCGTCGAAGCAAACCTGATGAGGGGGCGTACGTTTGTGTGGCACGCAATTACTTGGGGGAAGCAGTCAGTCGAAATGCCTCACTGGAAGTAGCATtgttACGTGATGATTTCAGACAGAACCCTACGGACGTGGTGGTGGCTGCTGGAGAGCCGGCCATCCTGGAGTGTGTTCCTCCTCGAGGACACCCGGAACCCACCATCTACTGGAAGAAAGACAAAGTGCGAATCGATGAGAAGGATGACAGGATCAAGATCCGTGGAGGGAAGCTGATGATCTCCAACACAAGGAAAAGCGACGCTGGCATGTACATCTGCGTGGGCACTAACATGGTCGGCGAGAGAGACAGTGAGACGGCCCAGGTCACTGTGTTCGAGAGGCCCACGTTCCTACGGCGGCCCATTAACCAGGTGGTTCTGGAGGAGGAGGCGGTGGAGTTTCGCTGTCAGGTGCAGGGAGACCCACAGCCTACCGTCCGCTGGAAAAAAGACGAAATAGACGTTCCCCGCGGGAGGtatgatattaaatatgataaagaCGACTATGTGCTGAGGATAAAGAAAGCAGCAGCGAGCGATGAAGGAACCTTCACCTGTGTAGCTGAGAACAGAGTCGGCAAAACGGAGGCGTCCGCCACCCTCACGGTCAGAGCCGCACCGCAGTTCGTGATCAGGCCTCGGGATCAGATTGTGGCACAGGGACGAACCGCCAGTTTCCCCTGTGAGACCAAAGGAAACCCACAGCCGGCGGTCTTCTGGCAGAAAGAAGGCAGTCAGAACCTCCTGTTTCCAAATCAGCCTCAGCAGCCCAACAGTCGTTTCTCGGTGTCGCCCAGTGGAGATCTGACCATCACGGCCGTCCAGCGGGCAGACGCGGGATACTATATCTGCCAGGCCTTGACAGTGGCGGGCAGCATCCTGGCCAAAGCTCAGCTTGAGGTCACAGACGTGTTGACCGATCGTCCTCCCCCCATCATCCGGCAGGGCCCAGCTAACCAGACTCTGGGAGTAGACAGTGTGGCTCTTCTGAGATGCCATGCGTCTGGAGAACCGGTCCCAACCATCAGCTGGCTGAAGGATGGGGTCAGTCTGCTGGGCAAAGACTCCCGCATGTCCCTGCAGGACCTCGGCAGCCTGCAGATCAAGGGTTTGAGGctCTCTGATTCTGGTATCTATACTTGTGTGGCAGCGAGTTCTAGTGGAGAAACGTCTTGGAGTGCTTTCTTGGAAGTCAAAGAGTCTGGAAGTCTTGTTGTAGTTAAAGACCGAGATGAGAATGAGCTCCCAGGTCCTCCTTCCAAACCTCAGGTCACCGACGTCACTAAAAACAGCGTGTCTTTGTCCTGGCAGCCTGGCCTTCCTGGAGCATCACCCATTTCATCATATGTTATTGAGGCTTTCAGCCAATCGGTGAGCAACAGCTGGCAGACTGTGGCCGATCATGTCAAGACCACCCAGTACACTATCAAGGGTCTTCGCCCCAACACCATCTACCTGTTCATGGTGCGAGCAGTTAATGTCCAAGGCCTAAGCGACCCAAGCCCGATGTCCGAACCCGTCCGTACTCAAGATATAAGTCCTCCGGCTCAGGGAGTGGATCACAGACACGTGCAGAAGGAGTTGGGTGAGGTTATTGTGCGGTTGCACAACCCTGTGGTCCTCAGCCCCACCACCATACAAGTTACATGGACGGTTGACCGGCAGTCCCAGTTCATCCAGGGCTACAGGGTTTTGTATAGACAGATGTCAGGGCTGTCCTCCCCAGGAGCGTGGCAGAGCCAGGATGTGAAGGTCCCCTCTGAGAGGAGCATGGTGCTCTCGGCTCTGAAGAAAGGCATCGTCTACGAGATCAAAGTCCGTCCGTACTTCAACGAGTTCCAGGGCATGGACAGCGAGTCCCGAACGGCAAGAACAACAGAGGAAGCGCCCAGTGCTCCTCCTCAGCAGGTGACGGTCCTCACGGTGGGCAATCAGAACAGCACATCCATCAGTATCTCCTGGGACCCTCCTCCTGCAGAACATCAGAACGGCATCATCCAGGAATATAAGatctGGTGTTTGGGAAACGAGACCCGCTTCCATGTGAATAAGACGGTGGACGCAGCCATCCGCTCAGTGGTGGTGGGGGGTCTCCAGGCGGGGGTCCAGTACCGGGTGGAGGTGGCCGCCAGCACCAGCGCCGGGTTGGGGGTGAAGAGCGAACCCCAAACCATCATCATTGGTAAAGACTTCCGGGATGTGATCATGAGCAGGAACAACAGCATCACGGAGCAGATCACGGACGTGGTGAAGCAGCCGGCCTTCATCGCGGGCATCGGAGGGGCCTGCTGGGTCATCCTGATGGGCTTCAGCATCTGGCTCTATTGgaggagaaagaagagaaagggTCTCAGCAATTACGCAGTTCAGTCGTTCACCTTCACCCCTGCAGTGACGTTCCAGCGTGTCGATGGAGGCTTGATGAGCAACGGGAGTCGTCCTGGTCTGCTGAACGCCAGCGATTCAGGATACCCCTGGCTCGCTGACTCCTGGCCGGCCACCAGCCTTCCTGTTAACAGCGGCTCCGGAGGACCCAACGACCTCAACAACTTCGGCCGTGGAGATGTGATGCCCAGCGCTCAGGCTGATAAAACGGGCACCATGCTTTCAGACGGAGCCATTTACAGCAGCATCGACTTCACCACCAAAGGCGGATTCGGCAGTCCAAGCCCCGCCTCCCAGGCCACGCCCTACGCCACCACCCAGATCCTCCACTCCAACAGCATTCACGAGCTGGCTGTCGATCTGCCCGAGGCCCAGTGGAAGACCTCTCTACAGGCCAAGCAGGAAATGGCCAACCTGGGCTACTCACTGCCAGACAAGAACTCCTGCAACaacaCACTCCTTTTCATTCCTGACTACCGATTGGCTGACGGATTGTCTAATAGAATGCCGCACAACCAATCACAGGATTTCAGCACCACCAGCTCCCACAACAGCTCAGACCGGAGCAACAGTCTGTCAGGTGGCAAAGGcggaaagaagaagaagaccaAAGCAAATGCCAAGCCTACCAAGATGAATGGCTCCAACTGGGCTAATGTTCCACTCCTTCCCCCTCCTGTCCACCCTCTTCCAGGCACAGAGATGGACCACTATGCCTCAGAGCACCATGACGGAGGAGGATATGAAAGTGATGGTTGGGGCCCACCCTTACCTGTGCAGACGTACCTCCATCAGGGTTTAGAGGATGAgctggaggaagaggaagaacgAGTGCCCACGCCACCCATAAGGGGTGTGGCCTCCTCCCCTGCAGCAGTTTCCTTTGGCAAGCAGTCCACAGCCACGCTGAGCCCATCCCCACGTGAAGAAATACAGCCCATGCTCCAAGCCCACCTAGATGAGCTAACCCGTGCTTACCAGTTGGACATGGCTAAACAGGCTTGGCACATGCAGGGTGGGCCTTACCCGCCCCAGGCCCCTGCACCGCCTGTGGGTTATATCTCCAGCACCCTAGTCTCTGATATTGAGACAGACCTTCCCGACGAAGATGACGACGATGAGGAGGACGAAGGATATGAGATGTCGCCGCCAATTAGGGGCATCGAACACACGCCAGGCTCAAGCATGGACAACTTGGACAGCTCTGTTACAGGCTCCATGGTGAACGGTTGGGGCTCAGCTTCAGAAGATGATGACAGAAACTTCTCCAGCAGAAGGTCTAGTGCCGGCAGCTCCTCTGACGGCTCACTCTTCACCCATTGCAGCTTTGCACGAGCCCTGGTGGCGGCTGCAGACAAGGCTGGTTACCGTCTGGACGGCACCAGCCTGAGCAAGAGAGAGAAAGGTCTACCTCATAGACCTCGTCCCGCTAGCCCGTTTTCCACAGATGGAAGCACGGTGGGCACACACAGCCTGGGTCACCAGCGGGCGGCAAGGCCCACTCGCAAACACAAAGGCCCTGGCACTGCTCCACACCGCCGCGATGCCAGCGCTGATGATCTGCCTCCACCACCAGAGCCTCCACCCTGCCAGACAGCTCGTGTCCAGGGGGCAAGGAACATGCCCAACCCCTCTGACCGCAAGGCTTCCTCCTTGGAGAGGCAACCCATGATGGGCCTGGAGGAGATGAAGAGTTCCTTGGACCGGCAGGCCCGAACCTCACTGGAGCGCCACCAACAAGCCCAGGACAGACTGGGATCCatagagagaggagaggagagcagaAGAGGACAGAAAAATGGTCCTGTTTCAGAAGAGGCCATATTGCCATACAACAAACCGTCATTCCCATCTCCCGGAGGCCACAGCTCTTCTGGGACAGCCTCCTCTAAAGGGTCAACGGGTCCTCGTAAAGGTGAAGGGACAAGGGGACAGCACCAGCGCTCCACCGCGGAGCAGGGCGAAAGCAGCTACATGGGGACCAACGCGCAGTACTCTGGAGAGTTATAGTGAGCCTTTTTGATGGAAACTGAAGAATGCCTTTATCTGTTCTGGAAATGCCTCACCTGCCTGGTGCAATGGACTCGTGAAGTGTCAGaaggaagaaggaaaaaaaaaagaaaaaaaatatgaaaaggaCAAACTGTAAATGTGATGTAAAGATGGACATGCAACCCACAAGATTCGCAACATCCCTCACCTTCCTCCTTAAACTAttcattcacagaaaaaaagaaaaatgttgaggacaaaaaaaaaaaaaaaaaaatggaaggcCCGAGATCTGAGTCGCCCAGCTTTGGTGAACTTGCGAAAAGGAAATCGAGTTTCCTGTAAATATATTCTTGACATCGGAGATTGAAAATgacattattgttattgcatTGCTATGCAAGCCGAGTTCTGTTTCTGCGCTCTCCTCCCTCTTACGCTGTTGGTCGTTTGTACGATATGTGAATTGATGGGCTGTGGTGCCATAGAAATTATGTTGTCATCCATCATTTGTTAATACTTCTCATGAATTAATTGTtgtcattataataattattataattaattattttcttttgcacTGCAATTTTGGTGATAAGCACAAAACCATAGCTCCTGCTGACATGAAGAATTGGAGGAAAGGAAATGTGAAGGGGAGTTTCTGTACTGTAACTAGagataagaaaatatataaccGTGTACAGAGATATATTAAGATATGCCTGCACCTATGCCGGCGGAAAGACTTACAGTTCTGACGAAACGAGTTACGAACTTTCGGCAGTGGGGTTCCTGCGAGAGGAACCGGACCCTCTCCATGCTGAAAATAGTCACAGTTGGGTTGGGAAACAGTTTGCAGGGAAATTTATCCTAGATGGTTCTATTTTCAACACGTCCAGCTGCCCCGACTAGTCAATATTACGCAATCTAGTCCACTTGGTCCAATTAGAACATATTTAGGCCAGATCTTTGAACTACACTGGACTACAGGTACCAACTCTGCCTCTTCCCCTGCTCACTTTTTTTGCCACTagcttttgttttgcatttagtCTTTAATTTGATCCATCTGAGCATAGCAAAATTAATTGACACCAAGTTCAATTgggctttttaattttttgatctCCACTTAAAATTTGACGACAAGCACTTGAAAAGTGAGTAATTTAAAAGCCATATGAACAAGACTACAATACCCCTGCCTTCCCGTAAGGCTTCTGCCTTACTCTAGAGGTCTTGTAGACATCAATTCCCGTGCTTGTCTTGAGATTCTGCGTACGTCTCAAATCACGAGTGGAGAATCAATTCAGGTaacttaatttaacatttttgttgagCACTTAATGTatcttgttttttgtatttctgacAATGTCCCAAAGCCTTGTTTTCGAGTTCTCCTTTACCTATGCAGGGCACTGAATCACTGAGATCCATAAATAAATCCACATTCATTGGTATCTTGATTCAAATAGTCGTCCTGTAATCACGTGCGGAAGTCTCAAAATGACTATCGAGCTAAAGCCAATAACATTGTGCATTCGACTTTGCAAAAATACGGCAATATCTCTCACACGATCGCTAAGGCATAGCAGTCGTACGATTTTTTCACGTCCTTGCTgtgtgctgtacaacatcaaTCAGACCTCCAGAAAACGTTTCCACTGTCTTTGGCCAATGCATCCAGTACGTTTACCGAACAGTCCAGTTGGTTCTTTTTGCTTGATgaaattttacatatataaatatattataaaaacaaaatgtacaaaaggcTGCTCAAAGGATATTTTTTACTGTGGAATCTTCAGGAGTAACTGGtgaaatgactgttttcttTCGTTATTTCCGTCTTCGTTTTTGTACAACGTTACTGAGGAGAGCTCTCCCAAACCGGGCTGACGTGCCGTCCCGTGTCTTTCTCTCAGAATTCACATCATTTCAACGCTAGTGTCCAGCTGTTTGGAATAATGAGGTGCGAACGAGTATCTCAGGTGATTTTACATCTATATTGGTGGTGTTGATGTgggtgtatataaatgtatatattcatatgcatCCTCACGTAAGAGAGTTCATTCCATGTTCGCTATTGAAACGTTTCTCCACCCCTTGTACCTGATGGATTGCAAtgctctctcttttcctttttgGCCCTGTCGACAGTGGATTTCCATTCCTTTCTCTTCCATCTGAAAACGTGCCGGTACACTAAATGTCCATAAGACAAAGATGTCACTTACAGAACATACCaaaattaatattgatatttctAATGTCTAATGCATTTTAGTGTCTTTTTTAATACTTGTTTCTTTAAACATcacagtgttgttgtttttttgtatttattaagaTAATAAAGGTATATTGTGAAAAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252704.1 lncRNA upstream 108760 20351597 ~ 20352384 (+) True LOC122359467
TU160083 lncRNA upstream 139198 20320881 ~ 20321946 (+) True G108337
TU159926 lncRNA upstream 158935 20297388 ~ 20302209 (+) True G108256
TU159932 lncRNA upstream 166188 20239367 ~ 20294956 (+) False G108257
XR_006252695.1 lncRNA downstream 5579 20833494 ~ 20838578 (+) True LOC122359263
TU160196 lncRNA downstream 5755 20833670 ~ 20838566 (+) False LOC122359263
XR_006252696.1 lncRNA downstream 5980 20833895 ~ 20838578 (+) False LOC122359263
TU160192 lncRNA downstream 20807 20848722 ~ 20849915 (+) True G108394
TU160223 lncRNA downstream 244166 21072081 ~ 21190373 (+) True G108418
XM_043258187.1 mRNA upstream 13058 20439195 ~ 20448086 (+) True LOC122358393
XM_043258870.1 mRNA upstream 22318 20405710 ~ 20438826 (+) True stim1a
XM_043259855.1 mRNA downstream 365136 21193051 ~ 21201218 (+) True cab39
XM_043259545.1 mRNA downstream 374934 21202849 ~ 21210105 (+) True itm2ca
XM_043258636.1 mRNA downstream 398237 21226152 ~ 21251420 (+) True ngef
XM_043258192.1 mRNA downstream 427268 21255183 ~ 21263444 (+) True efhd1
XM_043259808.1 mRNA downstream 457472 21285387 ~ 21295902 (+) True gal3st2
TU159872 other upstream 206873 20189033 ~ 20254271 (+) True G108230
TU159863 other upstream 207402 20189033 ~ 20253742 (+) False G108230
TU159895 other upstream 211172 20184120 ~ 20249972 (+) False G108245
TU159894 other upstream 211172 20247202 ~ 20249972 (+) True G108245
TU159917 other upstream 251818 20208170 ~ 20209326 (+) True LOC122359185
TU160236 other downstream 383895 21211810 ~ 21214493 (+) True G108431
unassigned_transcript_2153 other downstream 424827 21252742 ~ 21252815 (+) True trnai-aau_69
unassigned_transcript_2155 other downstream 425562 21253477 ~ 21253548 (+) True trnaw-cca_2
unassigned_transcript_2157 other downstream 427019 21254934 ~ 21255005 (+) True trnag-ucc_4
TU160418 other downstream 896640 21724555 ~ 21726174 (+) False LOC122358705