RNA id: XM_043258187.1


Basic Information

Item Value
RNA id XM_043258187.1
length 4051
RNA type mRNA
GC content 0.47
exon number 23
gene id LOC122358393
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20439195 ~ 20448086 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAATGAAAGTTGAGACGTTCCTTGGCGTTCCTGCAAAAGGCACCGTTAtagcatatttttaacatattttgctagcttattattattattgaacgTGTAGGGAAAAACGTGTGCCGAAGCAAAATACGGTTGCCCAGAATCTCACACAGCGCTTAACCTGAGAGTAATTATTCATGAGCTAAGTTTGCGTTCGAGGGTGGAACTCATCCGTTGTGTTTGCTTAAACTCTTCCACCTGCAGCTCAAACAGGATGTTATTCCGGGCCTGTTGACGGGCTCGGGTACCTGCTCTGGCGTCTGATCACAAGAAATCCTCCTCTGCGACGGTCTTTGATGCGGATATGGTGCAACCAGCCAAATAACGCAACGATATGCGCGACTGTGCACCATGAACGCAGCAAAAACCCAATTTTAGTCATACACGAGTGGCTTCGTTTAATCCAAAACTTCTGGTGGTTGTTGGGTTTCGCAGAGGAATGATGGGAGACCCGCCAAAGATATTTTACCGCTTGTGTTTACGCGTTATTATTTCTATGTCTTTAACTGAGTGCCTGAGCCGATCCAGCGCAGGTAACGTGGCTTTCCTTGACGCACCTGACGCGCCGGTGTCCACCTGGAACCTACCCGTTAAGTACAGCTGTTTCCAGGCGTCCGCAGTGCATGTCCAGGTTCTGGTTTCTTTCGATACCGGCTCTACCTCAGTCGTTTTCCACAAATACTGGACCTGCGATCCGGGACGTGCCAGAACCCGAGTGGTGTCCGTGAATTTTCCTGACTGGCTCGTGTACAGACCTGATTGGATAATACGCGGTTCCGATTGGGTTCTCAGCTGCTTATTGCGCGCTTGGATCGGACCGGATGAGTCCACCGGACCTGGCAGGTTTCCCGGAACCAGTGTGACTGTTCCCCTTGATATTCACTCGCCGCTGAGTCGACCCTTCAAACAACACCAGCTTTGTGCCAAATGGGACACAGATTTGCTGTGGAGAGTCAGAAGAGATGACAGTCCACAGTGCTTGGAGGAAAATGAGGTGGTATCTCTTCTTTCCACAATTTATGCTTGTACTGGTGAACGTTATGGCATCATCAAAACCCTCCGGCCGTTCAGAAGCGAAGTTTTGGAAGGATTGAGAACCAAATCCATCTATTATCCCTGGTTTGCTGTTTCGCTTTGGGTTTTGGTGGAGAAACCTTGCAGTGACCACTTATGTGGACTACTGCTCCACATCGATGCTGAAAACAATTACGCCACCCCTACAATATTCCTCACAGACGCTGGTAAGATTCATGTCCAGGTGCATGGAGATGCTGGGCACTCCTCAGCATTCCTTTCATCTTTTAAGGTTCCTCTTCATCGGTGGTGTCGTATCAGCCTTGAGATTCTGGGGCGTGTGGCAAAAATTTCTATTGCATGTATGGAAGGGCAGCGGAAATACTCCAGCACAGCTGAGCATGTATTTGGCAAGAACGTCATGCTGGATGACACGCATGGATATTTTGTGATTGGTGGAGGTAAATTTATACAAGGCATTGAAGGGTATTATGGACCAGCTACATATTATCGTATACAGGGGCTCCCAGCTGACCAGGCTGAGATTCACCTGCCTCCTATAATATCAAAAGTGAATATAACCGGATGGTTCCAGTCTTGTGAGAATTTCAAATCCGAGCTGTTTCTGTCTGTAACGGATCACTCTCTTACAGTAAAGAGACCCCCAGGCAGCTGTTTGGACACGTACACAGAGCTGCTACTGAATCACAGTAACGCCAACTCCGCAGAACAGTGCGTGCTCTTCGAAACAAACCCTCACAGGCGCCAAGTTGCACGGCTGACCAAACTAGTATCACAGAAATATGGCAGGGTGAGCGCATCAGCTGTGGGCAGGATTCTGTACGCTCTAGTCGTCCGTAAGATCGGTGCCGCTCACAGTCTGGATGTTATAACCAGGATGATGCCTTTCCTGCTGAGGTCTGGCTGTTTGGGAGACGACAGAGCACTGCATCTGTCCTCTGTGCTGTACAGCAGTGGATTCGGAGTCAGGAGACAGCCGtataagGCCTGGCTGTTGTCCCTCTTGTCAGCTCGGAAGGATTGGAGGTTGGCTCTCTTACGTTTAGGGCACATGCACCATGTCGGTGACCTGGAGGTGACCCCTGATCGTGACCTTTCCTATGCTTATTACGTTAACATCGCCAGACAAACCAGCACTGATCAGAAGAATCCCTCCCCACAGCAAACCTTTGTTGAGTTAATACGTTTAAATGATGAAGAGACCCTGAAGGCCCAAACCAATGAAAACGATGATCTGTTTCACTGGCTGAAGCTTCAGGCGCGAAGTGGAGTGGCTGAAGCTGAGcaAGCAATGGGGCGCATGTTATTCTGGGGTCAGCAGGGAGTGTCTCCAGACATTCAGACAGCAGTGAAACACTATGAGAGAGGTGCCACCAAACTCAATGACCCTGTGTCCATGTACGACTACGCTATTGTGCTCCTTACGGGCCAAGGAGTTCCAAAAGATGTTCAGAGAGCCGTTATGTTCCTGAAGAAAGCAATAGAACAGGGCTCTGTTCCGGCTATCACTGCTCTGGGCTGGTACTACGAGCAGTATGAGAAGGATTACGAGAAGGCTGTACATCTGTGGGAAGAAGCCGAGGCCAAAGGTCACCCTGATGCCGCTATGAATCTGGGGGTTTTCTACTCTCAGGGCCTGTATCCTGGACAAGCTGCCGACCAGtttgaGGCATATAAGTACTATTTAAAGTCAGCCCAGCGAGGACACTTAAACGGTGGCATTGAATTGGCCGATGTTTGGATACATGGGATTCCCAGCCGAGTTGCCAGACGCCCAGCAGATGCTGTTCTTTGGGTTAAATGGGCGTCTGAACAGAATGGATATCTGGGAACGGTCTTGAGGAACGGACTGAATGCCTACTTCAGAGGAAACTGGATCATGTCTTTGATTTATTATCTGAGTGCAGCAGAGAGTGGATTTGAAGCAGCTCAGTTTAATGTGGCGTACCTGTGCGAACTCAACTCAGGCTCTTTGGATCCAGTGCTGGTGACTCGGTGCATGTTGAGATATTATAACATGTCGATACAGGCTCAAGATCCGGCTGCTTACGCTTTGATTAGAATGGGAGATTTGTTCTATGGTGAGCAGGCTTTGGGCAGAAAAGAGGTTTCTGATGCCGCAGAGCTTTATAAGCAAGCAGCTCTCAAGAACGAACCACAGGGTTGGTATAATCTTGGCCTGCTTGTCCAAAGCGGGGAGTCTCTGCCGTTCAGCGTGCTTTCTGAGCTCAATTTGCTTCACCTTCACTTAACAGACCGACAGACGCTTCTCAGCGCCCTGTTCCAAAGATGTAGAGAGACCAATAGCAGCGACGCCTACCTGCCCTGCACACTGGCGCTGTTCAGCACACACCTGCAATCTTTACAACTACACCAAGATACTGCAATAAAGCTCATTGCCACAATTTCGGCTGCAGTCGGAGCTCTGTCTTTTGTGTTCGGACTGATTAAATGGAGGACAGCGCCACTCAACCAAACATCTCGATCCCAAACATCAGCTTCCAGCCAAAACCAAGAGGAGGAGGAATCCTAAAGAATGActtttagtagtttttattatttttttttttaatagcagttCTAGACATTCTCGGTTTTACCTCCATGCGAAGCACTTGTTTATTATTCGTATTTGAGCCATTAAAAGATGCAGAATAACTTGAAATCGAAGCGCAATCTGAAATGTAACTACACGGCCATATACgttcattttctgtcatttattcaccctcaagttgttccaaaccttcaACACAAATGacgacatttaaaaaaaataaaatgctggtagccattgacttccatatatggaatataaatgaaagtcaatgggtacCATCAacttcaacagaagaaagaaactcatacaggtttggaacaaattAAAGGTGACCAAATGCTaacaaaactcattttttggtgaactatgcccatcattaatttataaatgatcCTTTTTCTAcaagtacttttaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252704.1 lncRNA upstream 86811 20351597 ~ 20352384 (+) True LOC122359467
TU160083 lncRNA upstream 117249 20320881 ~ 20321946 (+) True G108337
TU159926 lncRNA upstream 136986 20297388 ~ 20302209 (+) True G108256
TU159932 lncRNA upstream 144239 20239367 ~ 20294956 (+) False G108257
XR_006252695.1 lncRNA downstream 385408 20833494 ~ 20838578 (+) True LOC122359263
TU160196 lncRNA downstream 385584 20833670 ~ 20838566 (+) False LOC122359263
XR_006252696.1 lncRNA downstream 385809 20833895 ~ 20838578 (+) False LOC122359263
TU160192 lncRNA downstream 400636 20848722 ~ 20849915 (+) True G108394
TU160223 lncRNA downstream 623995 21072081 ~ 21190373 (+) True G108418
XM_043258870.1 mRNA upstream 369 20405710 ~ 20438826 (+) True stim1a
XM_043258871.1 mRNA upstream 369 20405710 ~ 20438826 (+) False stim1a
XM_043258872.1 mRNA upstream 369 20405712 ~ 20438826 (+) False stim1a
XM_043258873.1 mRNA upstream 369 20405713 ~ 20438826 (+) False stim1a
XM_043258314.1 mRNA upstream 82570 20353829 ~ 20356625 (+) True LOC122358498
XM_043259047.1 mRNA downstream 13058 20461144 ~ 20827915 (+) False robo2
XM_043259054.1 mRNA downstream 13058 20461144 ~ 20827915 (+) False robo2
XM_043259051.1 mRNA downstream 13058 20461144 ~ 20827915 (+) False robo2
XM_043259055.1 mRNA downstream 13058 20461144 ~ 20827915 (+) False robo2
XM_043259048.1 mRNA downstream 13058 20461144 ~ 20827915 (+) False robo2
TU159872 other upstream 184924 20189033 ~ 20254271 (+) True G108230
TU159863 other upstream 185453 20189033 ~ 20253742 (+) False G108230
TU159895 other upstream 189223 20184120 ~ 20249972 (+) False G108245
TU159894 other upstream 189223 20247202 ~ 20249972 (+) True G108245
TU159917 other upstream 229869 20208170 ~ 20209326 (+) True LOC122359185
TU160236 other downstream 763724 21211810 ~ 21214493 (+) True G108431
unassigned_transcript_2153 other downstream 804656 21252742 ~ 21252815 (+) True trnai-aau_69
unassigned_transcript_2155 other downstream 805391 21253477 ~ 21253548 (+) True trnaw-cca_2
unassigned_transcript_2157 other downstream 806848 21254934 ~ 21255005 (+) True trnag-ucc_4
TU160418 other downstream 1276469 21724555 ~ 21726174 (+) False LOC122358705

Expression Profile