RNA id: XM_043258683.1


Basic Information

Item Value
RNA id XM_043258683.1
length 1057
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC122358794
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20261727 ~ 20267188 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAATTGAACCAATAAGAGCGCTGCGCTATCATTTGCTGCAGCCAATGACGAGCCGGGAATCTCATTGCGCGCGGAAGAGGAATGTCGGATTGTGACAGAAGTCGATCGTCGGCAATCTTTCAGCTAAGGgAAACAGACCAGGAGGTACAATGCTTCACTGTAAAATCAAGACTGAGAAAACAGACGCTGGGGCTCGAAACCGCCTTGATGCGGTATTGCAGGGTCTGGTTGAGAGGAGTGACAGTGAGAGAGAGCAGAATGAAGAGGATTCTGGGAAAATGGTGACAGACTCTTTAAACAAGGATTTGTCGCCTTCTTCTGCAGGGAAAAGACCATCTTCGCGATTCCCTCAACACAGAAGGAAGAAGCGTAAAGAGATGGATGATGGTCTGGCAGAAACCaaccagcacaaacaaaATGCTTATATTATCAAGTTATTTGACCGCAGTGTGGACTTGGCTCAGTTCAGCACCACCACGCCGCTCTATCCCATTTGTCGGGCATGGATGAAAAACAACCCgtctgagagagagaacagCACCCAGCCCCCTCACAGCTCTGGGGAGGATGAGATGACTGACATGTTGAATGGCAAAGCACAGAACGTGTACAGGCTTCCTCCACCTGTTTCCTGTCCAGTAGGTTCAGCTGGTGACCCCGTCAATCTCAGAATTCCACCTGTAGAGAAAGCTACAGAGAGCCAGtctgtAGATGCTGCAGCAGGCACCTCACCTCTTATCTTCAATCACATCAAACGCTGGAAGAAAATCAGACAGAAGTGGAAGGAGGCTTCCAGTAAGAACCAGCTGAGATACAGCGAGAGCATAAAAATCCTTAAGGAAATGTATGAACGTTAGTTCTCATACATCACAAGTGCATCGGAGAAAATATGCGAAGGCAGTGAAACAAAGATGTCCAGGAATGGAGCCTTCAAGGAGACTCAAGTGGTtaaaccaaaacttttaaattgagagttgaaataaatgattttgtattgtctttatttttccctttaaatacaagaacttcaaataaacattacagtacTAAAAATGA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0017053 transcription repressor complex cellular_component

KEGG:

id description
K21774 LIN37; protein lin-37

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159884 lncRNA upstream 28542 20170769 ~ 20233185 (+) True G108240
TU159916 lncRNA upstream 46248 20208170 ~ 20215479 (+) False LOC122359185
XR_006252691.1 lncRNA upstream 53068 20208170 ~ 20208659 (+) False LOC122359185
TU159874 lncRNA upstream 119355 20141805 ~ 20142372 (+) True G108231
TU159839 lncRNA upstream 205833 19998614 ~ 20055894 (+) True G108211
TU159926 lncRNA downstream 30200 20297388 ~ 20302209 (+) True G108256
TU160083 lncRNA downstream 53693 20320881 ~ 20321946 (+) True G108337
XR_006252704.1 lncRNA downstream 84409 20351597 ~ 20352384 (+) True LOC122359467
XR_006252695.1 lncRNA downstream 566306 20833494 ~ 20838578 (+) True LOC122359263
TU160196 lncRNA downstream 566482 20833670 ~ 20838566 (+) False LOC122359263
XM_043258684.1 mRNA upstream 7991 20251992 ~ 20253736 (+) True LOC122358795
XM_043258685.1 mRNA upstream 11994 20247178 ~ 20249733 (+) True LOC122358796
XM_043259610.1 mRNA upstream 57507 20198240 ~ 20204220 (+) True lin37
XM_043259609.1 mRNA upstream 70958 20188914 ~ 20190769 (+) True hspb6
XM_043258937.1 mRNA upstream 74866 20184067 ~ 20186861 (+) True psenen
XM_043259831.1 mRNA downstream 50358 20317546 ~ 20334995 (+) True LOC122359506
XM_043259833.1 mRNA downstream 50358 20317546 ~ 20334671 (+) False LOC122359506
XM_043259834.1 mRNA downstream 50358 20317546 ~ 20332892 (+) False LOC122359506
XM_043259832.1 mRNA downstream 55774 20322962 ~ 20334995 (+) False LOC122359506
XM_043259835.1 mRNA downstream 64897 20332085 ~ 20334995 (+) False LOC122359506
TU159872 other upstream 7456 20189033 ~ 20254271 (+) True G108230
TU159863 other upstream 7985 20189033 ~ 20253742 (+) False G108230
TU159895 other upstream 11755 20184120 ~ 20249972 (+) False G108245
TU159894 other upstream 11755 20247202 ~ 20249972 (+) True G108245
TU159917 other upstream 52401 20208170 ~ 20209326 (+) True LOC122359185
TU160236 other downstream 944622 21211810 ~ 21214493 (+) True G108431
unassigned_transcript_2153 other downstream 985554 21252742 ~ 21252815 (+) True trnai-aau_69
unassigned_transcript_2155 other downstream 986289 21253477 ~ 21253548 (+) True trnaw-cca_2
unassigned_transcript_2157 other downstream 987746 21254934 ~ 21255005 (+) True trnag-ucc_4
TU160418 other downstream 1457367 21724555 ~ 21726174 (+) False LOC122358705

Expression Profile