RNA id: TU124288


Basic Information

Item Value
RNA id TU124288
length 972
RNA type TUCP
GC content 0.49
exon number 3
gene id AMCG00015666
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 15687642 ~ 15703290 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agctctgcgcagaactgcggaaatctgcccCACACGAAGTGAAAGCAAAGGGATAGTTTCGTCTTGTTTAGTGGATGGTGTTTGCTCGGACTCTCTGTACTACAGAAATCAACATCTGAAATCTGCCGTCAGCACAAATCGCAGCTGTTTTAATACATAATCATGAAATATGAGGCTGCTGGACTTTCTTCGAGTGCTGCTGGTCTTTGTCGCTGAACTGTGTCTGTCTCTTGGTCAATCTGAGCTGCTGAAGGGTGTTGTGGGAGAGGCGGTCACTTTTAAATATCCAGTGTTAAAGGATGGCTTCTTGAACTACAAGTCTGGAGTCAGTATTGCACATGTGTCCAACAGTACGCTCCGTCCTGTTTTTGTGGAGAAATTGAAAGGGAGAGTGCACTGGGACAGAGACTGGGCTCTTCAGCATCACACAGCTCTTTTTGAACGACACTGGGAACTACGCAGTGCAGAACACCGGAGGACAGAGCTCAGTCACAACAGACTTCCACCTGATGGTTTACAatgCCATATCGGAACCTCAACTGTCTGTGTCTGATAAAGGCAGTCTTCCCCAGAGACCCTGCCTTGTAGAGTGCTCCGTAGCGAATGGCAGAGAGGTGACGCTGTACTGGCACAGCAAGGGAAAAACAGTGTCCAGCACCTCCTCCTCTGACCTCAACTCCACCCTGACTCTAGCTCTACAGATCACAGGGCTTTCTGACTCCTACAGCTGTATTGCCTCCAATCCCATCAGCATCTGGATAGTCAGTGCTAGTGGGCTCTGCAATGGTGAGACAGCATGTACTGAAGTTGATAAAGTAAATTGTACACAGACCAGCACACAGCTCCTCCATTGCCTGCGCTCTATACTTGTTGTGTTAATTGAGTGTGTGCTGGCTCTTTGTGTATGTGCGCGCACTAtgctctgtgtgtatgtgtgctgtatttctgtgtgtgtgtgtgtgctctatGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124272 lncRNA downstream 68470 15632395 ~ 15632608 (-) True G99516
TU124269 lncRNA downstream 135687 15565126 ~ 15565391 (-) True G99513
TU124223 lncRNA downstream 386625 15314153 ~ 15314453 (-) True G99476
TU124192 lncRNA downstream 448361 15249901 ~ 15252717 (-) False AMCG00015660
TU124193 lncRNA downstream 448361 15249901 ~ 15252717 (-) True AMCG00015660
TU124299 lncRNA upstream 50526 15753816 ~ 15754026 (-) True G99535
TU124360 lncRNA upstream 176128 15879418 ~ 15883521 (-) True G99565
TU124372 lncRNA upstream 199161 15902451 ~ 15959831 (-) True G99576
TU124396 lncRNA upstream 283794 15987084 ~ 15990263 (-) True G99594
TU124406 lncRNA upstream 296512 15999802 ~ 16004030 (-) False G99596
AMCG00015664 mRNA downstream 143302 15555165 ~ 15557776 (-) True AMCG00015664
AMCG00015662 mRNA downstream 362016 15338036 ~ 15339062 (-) True AMCG00015662
AMCG00015660 mRNA downstream 448357 15249977 ~ 15252721 (-) False AMCG00015660
AMCG00015658 mRNA downstream 456184 15236134 ~ 15244894 (-) True AMCG00015658
AMCG00015659 mRNA downstream 500287 15170616 ~ 15200791 (-) True AMCG00015659
AMCG00015667 mRNA upstream 89223 15792513 ~ 15814359 (-) True AMCG00015667
AMCG00015672 mRNA upstream 354512 16057802 ~ 16060001 (-) True AMCG00015672
AMCG00015676 mRNA upstream 549129 16252419 ~ 16272647 (-) True AMCG00015676
AMCG00015677 mRNA upstream 612198 16315488 ~ 16324527 (-) True AMCG00015677
AMCG00015680 mRNA upstream 742682 16445972 ~ 16448187 (-) True AMCG00015680
TU124200 other downstream 440594 15259461 ~ 15260484 (-) True G99454
TU124167 other downstream 511684 15102617 ~ 15189394 (-) True G99426
TU124175 other downstream 529406 15170615 ~ 15171672 (-) False AMCG00015659
TU124012 other downstream 962804 14690387 ~ 14738274 (-) False AMCG00015645
TU124002 other downstream 1005708 14690870 ~ 14695370 (-) True AMCG00015645
TU124430 other upstream 314293 16017583 ~ 16102456 (-) True G99605
TU124478 other upstream 518475 16221765 ~ 16222155 (-) True G99646
TU124562 other upstream 826087 16529377 ~ 16535468 (-) True AMCG00015691
TU124837 other upstream 2134290 17837580 ~ 17837942 (-) True G99939
TU124970 other upstream 2925053 18628343 ~ 18630665 (-) False AMCG00015723

Expression Profile