RNA id: AMCG00015677


Basic Information

Item Value
RNA id AMCG00015677
length 3272
RNA type mRNA
GC content 0.40
exon number 10
gene id AMCG00015677
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16315488 ~ 16324527 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGattgACAAAGTGTACAGCATTCAATATTCTGTGTCTTTCCTTCAATCTGAAGTTATAAGCTTTAGCAACGGCTCCATCCAGGTTGACCTAGACCTGGTGTTCAACAGCACCGGTTCAGTCCCCAATATAACCACAGTCATCAGTGTTCTCCTGATGGCCATTGACCAGGGCAATATCTCTCTGCCCATTGACCCAATGTCCATTAAAGGAAGAGAAGTAGCGACAACATCGGCTCCACCCACCACAGCTGCTGCAACTACGACCCCAGCTGTGACTATGCATAGCACTGGATCTGTGAGCAACAGCACATCTGCCTCTGCCAATACCAGCACAGTAGCGACAACATCAGCTGCACCCACCACAGCTGCTGCAACTACGACCCCGGCTGTGACTATGCATAGCACTGGCTCTGTGAGCAACAGCACATCTGCCTCTGCCAATACCAGCACAGCATTCAGCACTCCTACCACTATTAATACCAGCACAACCTCCCCCAGTTCCACCACTACCCTCCCTGCCACCCCAGTACCTCAGAACACAATCATGCTGATCTTCAAAATTGTGAAGAATTTTACAGAGGCTTTGAATAATAGAAACTCTCTGGAATTTATCAACCTGGCCACAAATGTAACAAGTGAGTCCACCGGCCTACTGGGCATTTGTCTGGTATGCTGGAAGGCCAATCCCAGATTCATCCGCACCTTTGTGGTGAAGTTTAGGAGTGGCTCAGTCATTACTGATCTGGACGTGGAGTTTAACAGCACAAAGGACATTCCCATGGACAATGACATCATCCAGACCTTCAGGAGTGTAAATTTTTCACTTCAAGTCGATTTTAACACCATTAACATCACCCGCAATGAGAACACCACAGGCTCTGCAGCTCCTCTCAGCCCCTCCAGTCCCTTCCCAGCTCTGCTGTTCTCTCTCCTTGCTGCGCTCCTCTCAGCCAGGCTGTTCCTGCACTAAACTCTCCTGTCAGAGACCGTCCTGCCAGAAAGCAAGTGTTCCTTCTGGCATTGCAAGAAACACTCCTGTTTTTCCCCAGAGGTGACCAGAGTTAAATCCATGCCATTGTTTTCTCCGCCTGCAAAAATAGAGCAGAAGTTCTGTTAAAAAGTCACCCTCGGTATCCTAAAAAACTAAGGGGTCGACAAACATCAGGCTCAAATAAAccaacatttgctttttaaccCCTGTTCCTTAGAAATCccagtttacatttaaatgcagtacTGTGCCAATATTGATAATAGCAAAACTAACACTACACTGTAAAACCCAATAAGTTAATTGAACTCAAAATTTTTTTTGAAACTGATTACATCGAAAAGTAACACTAATTCAATTTTATAAGTTAAAGCAACATTCTTTAGTAAGTAGGTTTAAACAGGTAACTTTAAGTGACActaactaattattttaaattaaagaagcaTTCTTTATTATGTTGCTTTTACTAAGTGATTTTAAGTGACATTTAGGTTAATTTGATAATTTAAAGAAACCTTCTTGATTAAGTAATTTTTACTAGGTATTTTGTGTTCatagtacaaattaaaattaagtacaggtaaaacatttttattacctttatcaaaaaacatttaatttctcatCAACAAATTGTCCACAGTTTACTtggtttttaaattaagatgtaCAAACTAATGCATTAGGTAACCAACTCTAAATTGctatacacattttgaaataaaaaaaacaggtcaacacaatttaaatttaagttaCTCTTTTATTaagtaaacataaaacattaacattaacacgTGGAACAACGTTATTGCATGAAATTGTCAAACCGCTATGCAAACCATCCCCTCATTCCCAAACGTGCATCTGCTATTTTGAGGTAGTACAATTTCTAGTTAGGCTAccataaaactacaaaaaaattaGATCTATGCACAAGTGACGCAATGAGactaatgctggggtcacactacacgatttctacaatcagacacgattttgtgaacagtaggcgactcacacttaacgactattttgcaccgaatttgtgtcttttgcgtcatgaaggagcgcacacagtacagacacacactgactgatctgACATGCTTGTCGtcgatctgcgtcacagcctgcAAACTCCCACATCCCACAGAAACACGCGTGTTCCACACAGATAAAAGGCCAACAAACacgttcgtgaagtgcagatgtccgcagttaattgaatttacaaattaacataTATGCAGCAATGTAACTTAATCcttgtattcataataatatctAACACATTTAAGTTAATGGTAGCTCCTCTGTTTGTCACACTGGATGAGCATTAAATGATGCTGGTAAGTTTATATCATGATAGCGAAAGGGGAGGGAGAGTTTTAACTCAACCgcacatttttggttttgtctggTTCATTAAAGTGTCCCATTACCGTGTTCACTGTACACACAGATGCCAGATGCCGACCAGGCCTCTCAACACCACAGCTGCCTCACTCTCCCAAACACAAAGTGGATCCCTTTGATGCTTGATTAAAATATAGTATGGGTCACCACAGATCCCCAGACAATTTTCACATGCTTTAATGACTTTATGTCATTCATCTTATGAAAATTGTAATGTATGGTAGAGCGATCATAtatctaaatgtatatatgcaagATATAGTATTTAAATACTAATACATTGAACTGACAAAATAAGCATAAGGATTGCAGACTAAAATAGCTTTCAGATATGCCCCATAAGGCAAAGTAACGtgaggagagagacagtgaggaatgtgtttgtttagcGACTGAAAGCCTGAGGGAACCACTTAACCTTACAGAACAAAGctatagttattttaatatattgtgtgcATATTTCATAtccatatgtttattttatatgttgaaaacaTATCTTTGACGTTAACCTCACCATACATAAATTACAGACTaacatatgtaatatgtatcCAATGCATTCTAATTACACAACAAATTGGGACACTActggcaaattaaaaataaaaggatttccACATTTGTACCATAATTTCAAATATAGGTTTGTTCCTTATAAGGACGTGGCTCACAGATATGCCCTCACAGTTTGAGCGACATAGATTGATTGCACATTTGATAGTAGAGTTTAAAGTCCTCTGTGAGTGACATTGTCCCTCAGTTCTGTGCTGGTGTGTCCTGTCCTCTGTGCCACTGTGTTGATTAATGAAAACTGCCTTGAATCCAACTGTACCACCGTTGTCCACTCCTGT

Function

GO: NA

KEGG:

id description
ko04928 Parathyroid hormone synthesis, secretion and action

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124513 lncRNA downstream 3518 16311708 ~ 16311970 (-) True G99679
TU124452 lncRNA downstream 185193 16130064 ~ 16130295 (-) True G99623
TU124443 lncRNA downstream 247359 16060196 ~ 16068129 (-) True G99614
TU124406 lncRNA downstream 311458 15999802 ~ 16004030 (-) False G99596
TU124405 lncRNA downstream 311458 16001183 ~ 16004030 (-) True G99596
TU124575 lncRNA upstream 100223 16424750 ~ 16428626 (-) True G99724
TU124598 lncRNA upstream 146380 16470907 ~ 16473177 (-) True AMCG00015681
TU124602 lncRNA upstream 172958 16497485 ~ 16498531 (-) True G99735
TU124557 lncRNA upstream 179264 16503791 ~ 16527927 (-) True G99710
TU124629 lncRNA upstream 236058 16560585 ~ 16572276 (-) True G99758
AMCG00015676 mRNA downstream 42841 16252419 ~ 16272647 (-) True AMCG00015676
AMCG00015672 mRNA downstream 255487 16057802 ~ 16060001 (-) True AMCG00015672
AMCG00015667 mRNA downstream 501129 15792513 ~ 15814359 (-) True AMCG00015667
AMCG00015666 mRNA downstream 612367 15687642 ~ 15703121 (-) False AMCG00015666
AMCG00015664 mRNA downstream 757712 15555165 ~ 15557776 (-) True AMCG00015664
AMCG00015680 mRNA upstream 121445 16445972 ~ 16448187 (-) True AMCG00015680
AMCG00015683 mRNA upstream 136195 16460722 ~ 16463940 (-) True AMCG00015683
AMCG00015681 mRNA upstream 142772 16467299 ~ 16470946 (-) False AMCG00015681
AMCG00015691 mRNA upstream 199587 16524114 ~ 16535290 (-) False AMCG00015691
AMCG00015690 mRNA upstream 212020 16536547 ~ 16546886 (-) True AMCG00015690
TU124478 other downstream 93333 16221765 ~ 16222155 (-) True G99646
TU124430 other downstream 213032 16017583 ~ 16102456 (-) True G99605
TU124288 other downstream 612198 15701078 ~ 15703290 (-) True AMCG00015666
TU124200 other downstream 1055004 15259461 ~ 15260484 (-) True G99454
TU124175 other downstream 1143816 15170615 ~ 15171672 (-) False AMCG00015659
TU124562 other upstream 204850 16529377 ~ 16535468 (-) True AMCG00015691
TU124837 other upstream 1513053 17837580 ~ 17837942 (-) True G99939
TU124970 other upstream 2303816 18628343 ~ 18630665 (-) False AMCG00015723
TU125314 other upstream 3650429 19974956 ~ 19976069 (-) False AMCG00015752
TU125431 other upstream 3945302 20269829 ~ 20279644 (-) False AMCG00015761

Expression Profile