RNA id: AMCG00015717


Basic Information

Item Value
RNA id AMCG00015717
length 2087
RNA type mRNA
GC content 0.41
exon number 16
gene id AMCG00015717
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 17971120 ~ 18028970 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAACTAGGGATGGCCCAGCGCAAGTTTGCACAGTCTCTTGGGGATTTTAAATTTGAGTATATTGGGGATGCAAAGACGGACGACGAGAAATGCATCGATGAATCACTACAGGAGTTCTCTGCTTTCCTTAAGAACTTGGAGGACCAGAGAGAACTGATGATGCGGAACATCACTGAGACACTGCTGAAACCTTTGGAGAAGTTCCGTAAAGAACAGCTGGGTTCAGCAAAGGCAGACCTGCAAGTGGAGCAGATGAGACTACATTTTCATGAAGAGTCACTGCAGTATGTTTACAAACTGCAAGAGATCCAGGAGAGAAAGAAATTTGAATGTGTGGAACCTATGCTGGCTTTCTTCCAGACAGTTTTCACATTCTATCATCAGGGATATGAGCTGGCAAAGGACTTCAACCATTACAAAACTGAACTGCAGATTAATATTCAGAATACTAGAAATCGTTTTGAAGGTACCAGGTCAGAGGTGCTGGACttgatgaacaaaataaaactaaatccaGAGGAACACAGACAGATGAGTCAACTTAGCATTGAGGGCTACCTGTATGCCCAGGAGAAAAgGCCGCCTCCCTTTGGCTACAGCTGGGTGAAGAGATATTGTACTTACATGAAAGAGCAGAAGCTATTTAACATGATTACATTTGATCACAGATCTGGAGGGAGAACtGGAGAACCAGAGTCTGTCACCCTCAAGTCCTGCACAAGGAAAACCACAGATATGATCGACAGGCGATTTTGCTTAGAAATTGAAGTAGCAGACCGACCAGGTGTTGCCATCGTTGTTCAGGCCTTATCAGAGGATGACCGTAAACTCTGGATGCAGGCAATGGGTGGGAAAGAACGGGTGCCATTCTTGGACAAAATTTCTTCAAAAAGAGAAGAAGatctGAAGACTTGCACTGAAGTGGATCTTTCTGCCTCTGAGGACTGGGACATTAAAACCATAACAAGTGCACTTAAGCTGTATTTAAGTGTTGCTGATAACTGCAAACAGAATCTAATGACTGTGGCAAACTTGGGTGTCGTGTTTGGTCCCACACTCATGAGACCTCAGGAGGAGACGGTGGCTGCTATTATGGACCTCAAGTTTCAAAACATTGTGGTAGAGATTCTCATAGAACAACATGAGAAGATTTTCAGAGGTCCTCCTGATGCATCTCTACCCACAGCCATAGTTTCTCCCAATGCCCCAACCAGGGCATCCAAGAAACAGAATCGCCAAAACAGGCCGCTTGCTGTATACAACCCTCAGGTTGTGGAGCTTCAAGCAGCCGATTGTTCAAACTCTGTGAAAGATGACACTTCATTGGGCAGTACAGAATCTGTCTCCTCCCAGTCTTCTGATGCTACCACATCTACCTCTGGCAGCCCTCCAGAGAAGGCCAGGAATCACCTAAGTACTAATGGTGGGAACCTCATGGACTGCTCTGGTGTCACAAACAGGAAAGCCAAAGCAGTGTACCCATGTGAAGCTGAGCACGCCTCTGAGTTATCATTCCAGGCTGGCGCTATATTTGAAGATGtGACTCCCTCAAGGGAACCAGGCTGGCTGGAAGGAGAGCTTGAAGGAAAGAGAGGACTTATCCCACAAAATTATGTTGAGATTCTATAGCTAAAGATTTAAGATATTGAGTTATACATGGTATCCATGATCTTCAGTAttgatcacttttttttttttttttttttggacttGCTTTTGCATATATTGTTATGCTTTCAAACagtcatataaatatttatctgCCAGTTTAAGTACCTGAAAACTGCCAAAAATAATACCATGTCGTCTTACAGTCCAATATAGATGCCATCTGTAGAGTCTTAAAGAGTAGACGATAAGGTAGGgacactgaaatatatatacaatgttaaatatttatatacaatgtgACATTAGTTCAATTTAAGACATTATTGTTAGAGAATGTTAATTTTATAAGGTAAGGAATTTTAAGTTTGTGATTCATGCATGACAATACTTTGTTGATTTTCTTGCAATGTTTTCAAAGATCATAATGCATCAAATGTATTTGgtaaacaatgaaaatgcatttattaataaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124847 lncRNA downstream 13633 17952758 ~ 17957487 (-) True G99944
TU124844 lncRNA downstream 13633 17955007 ~ 17957487 (-) False G99944
TU124840 lncRNA downstream 37792 17933000 ~ 17933328 (-) True G99942
TU124839 lncRNA downstream 65664 17905037 ~ 17905456 (-) True G99941
TU124835 lncRNA downstream 167201 17802158 ~ 17803919 (-) True G99937
TU124906 lncRNA upstream 115306 18144276 ~ 18144517 (-) True G99997
TU124934 lncRNA upstream 316264 18345234 ~ 18399021 (-) True G100019
TU124955 lncRNA upstream 487481 18516451 ~ 18516729 (-) True G100038
TU124956 lncRNA upstream 531745 18560715 ~ 18560947 (-) True G100039
TU124957 lncRNA upstream 562482 18591452 ~ 18598196 (-) True G100040
AMCG00015713 mRNA downstream 423624 17523279 ~ 17547496 (-) True AMCG00015713
AMCG00015711 mRNA downstream 482518 17337333 ~ 17488602 (-) True AMCG00015711
AMCG00015712 mRNA downstream 638389 17331652 ~ 17332731 (-) True AMCG00015712
AMCG00015704 mRNA downstream 839345 17127907 ~ 17131775 (-) True AMCG00015704
AMCG00015702 mRNA downstream 952738 17006122 ~ 17018382 (-) True AMCG00015702
AMCG00015718 mRNA upstream 18221 18047191 ~ 18055915 (-) True AMCG00015718
AMCG00015719 mRNA upstream 42330 18071300 ~ 18072718 (-) True AMCG00015719
AMCG00015720 mRNA upstream 73704 18102674 ~ 18121761 (-) True AMCG00015720
AMCG00015721 mRNA upstream 408213 18437183 ~ 18437479 (-) True AMCG00015721
AMCG00015722 mRNA upstream 408770 18437740 ~ 18439149 (-) True AMCG00015722
TU124837 other downstream 133178 17837580 ~ 17837942 (-) True G99939
TU124562 other downstream 1435652 16529377 ~ 16535468 (-) True AMCG00015691
TU124478 other downstream 1748965 16221765 ~ 16222155 (-) True G99646
TU124430 other downstream 1868664 16017583 ~ 16102456 (-) True G99605
TU124288 other downstream 2267830 15701078 ~ 15703290 (-) True AMCG00015666
TU124970 other upstream 599373 18628343 ~ 18630665 (-) False AMCG00015723
TU125314 other upstream 1945986 19974956 ~ 19976069 (-) False AMCG00015752
TU125431 other upstream 2240859 20269829 ~ 20279644 (-) False AMCG00015761
TU126211 other upstream 6963983 24992953 ~ 25000890 (-) True G101067
TU126708 other upstream 10132867 28161837 ~ 28257732 (-) True G101456

Expression Profile