RNA id: AMCG00015860


Basic Information

Item Value
RNA id AMCG00015860
length 4191
RNA type mRNA
GC content 0.47
exon number 12
gene id AMCG00015860
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 25847036 ~ 25980178 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATTTGGATTTCTGGATGAGTCTCTCAAATTCAGAGATCCGTGTCGGCACCATGTCCCTGGGCACTTCATCGCTGACCTCTCTCCAGCCCGCCAGCCGGTCCTTCTGTTGCTCTCTCTCGTACTGCAGTATCCTGGACTTGACTGAGCAAATGACCTCAGAGGACAGCAGGTCCTTGCGGTTGATGTGGTGCATCTTCCTGTACAGCTTCAGGAATCCGGGGGCGTCGTGTGCCGATCGGTGCCGGGCTCTGGGCCTGCGAGGCTCGGGGCCCTTGCAACAGCTGCGATACGGGTTCTTGGATTCCTCGTCGCACATCAATGAGCCCACACTCTCGGATCGCGTCTGGGTGTCGGTCATGCTGTCGTGTTCGTCCGTCAGGAGGTCATCGCAACTCCGAGACTTCAGCTTGGGGGAGACTGTGTCCTCGGTGCTACTCCAGTTTTCTGCGTTTTGCCGGTTCATTTGCCAGCCGTTTTTGAAGCAGATGGCTCGTTTGGATCCGAGTGGAACCACAGGGAAAGGTGTGGCTCTGTCTCTTGGTCTCAGCTGTGACAATGATGGCataggaggaggaggggggggcacAGGCGATGAGTCTTTGATGGCGTTGGTGCCATTGTCTGAGATGCTTTTGGACAAGGGCCGcaCGGCTGTGGAGGACTCGCTTTGTGTGCTGGAGGAGTACTGGCTGAGAGCGGACTCGGTGACGGGGGAAGTGGTTTCGCTCAGGTGCAGGGTGAAGTCAGGGGTGGGGGCGCTATACTCGAAAGGGGAGTACAGAGCTGGGGAGAAGGCCTTGCGCAGAAGAAGAGCCTGTGGCTGGCCCCTGGGGGACCTTAGGCCCAGGCTGGGTGCTATGAACTGTGACTGGTGGTGCTATCTGGATGGAAAGAGACGCTGTGTGTTTCTCAGATTGGCTCCTGGATTCCTCAGGGGATTTAGAGCTGGCCGCTGGGTGGGTCTCAGGGTTCGACTGCCCACTATGAGGGGGACTGAGAGATTGGATCAGGATGGGTGTACGCCTGTAGGGCTCCCCAGCGACACTGTATGTCACGTTGACTATTCAAATAATACCCGCATAAGCCCAGGTCGCTGGTTTCATGTGCAGACACATATTGGCGCAAAGGTGCGTCTGGACTGCTCCCCCCCGGGCAGCGCAATCCGCAGAGGCGCAGACAGCGGCCGCTTACCTGGCGTCGGACGCCGCGTTCAGCGCAGAAATCCTGCCCGGCTGGATGTGCCGGAGTCCGGGCTGAACGTGTCCGAGACCTCGCACTCAGGTCCACGCAAGTCCGAGCCGCAGCGAAAACACACACCTGCTCCCTCGGCGGCGTCTGTCCAAATACAGCAGAGCCGCGGCCGGGGACAGCCTTGGATGACCAATAACTCAGGCCTGATCTGCCTTCACATGATCTCCAAACTAGAACATGTGCTTGATGATGTCATAATGACTCAGGATATGCCTGCTGGTGCCCCGAAGACAGTGAAAATgatgtatttcatattcatgtttGGTTTTGCACTTATTACTCCACACCACTGCTACACAAAGGATAAGAAGACGGGCTGTACAGTTAAACAACAAAAGGCAGACTGCAGTCATCTTAAACTGACAGACATTCCTTCAGATCTACCAGAAAATATTACTTATCTGGACCTTTCACATAATCAGCTGAAGGGACTGGCCTCTTCAAACCTCTCACGCTACAGCCAACTCATTTATCTTGATGTTGGTTTTAACATGATCAAGACCATTGAACAAGAGATGTGTCTCAGACTTCCTCATCTCCAGACACTGAACCTGGAGCACAATGTGGTGCACATCCTCACAGAGACTGTGTTACAAAGCTGCACCAATCTCACTCAACTGAACCTGTCTAACAACCGCTTAAAAATCAAGGGCGAACCTTTCAAAAGCCTGCAGcatttaaaaaagtttgatGTGTCTCATAATGGCCTGACCTCTGTGAAACTTGGTACCCAACCTCAGCTCTGGGGCCTTGAGGAACTCATCTTATCAGGAAACCTAATCTCTGTTATCAAGAAAGATGACTTCTCTTACCTCAACAACACCTTCCTGAGGATCCTGAAATTGTCTTCTCTCCCTCTGAAAACGTTAGAGCCAGGTTGCTTCCAGCACATTGGAGGAATACAAGACCTAGTATTGGATGGTAGCAATCTTAACAATCCTCTGGTAGTCAAGCTCTGCTCAGAGTTGACAGGGACTGGGATTCGCAACCTTTCACTCCAAAGCACATCTCTATCCACACTATTGAACACCACCTTTAACGGATTGAAGTCTACAAACCTTTCAGTGATGGACCTTTCAAGAAACCAAATGTCTACAATTCATGATGGGTCTTTTCAGTGGCTGCACAATTTACAATATCTGTCTCTAGAAGAAAATAACTTGAAGCATTTGACAAAGGACACATTCTTGGGTTTAGGGAACCTGatctttttaaatctgaaaaagacTCTGATGAAGCATAAGTCAACTCCTTACCCTATTATCGACAACTTTGCCTTTCAGTGGCTGGTAAACCTACAGTCTCTATCTATGGAAAGCAGTGCCTTTCGTGAAGTCAAAGAAAACACTTTCACAGGTTTAAAAAGCCTAACGTACTTGAGTCTGAGCTGGTGTAGCACGACTCTCTCAACCATAACTAATACAACATTTGCATCTCTGAGTCAGTCGCCTCTCAAGATCCTTAACTTGACCGCTACAGACATTTCACACCTGGGGAACGGAGCCTTCTCTAACCTCAGGAATTTGAGCAAACTATATCTAGGTCATAACTTTATTTCCCAAACCTTAACAGGAAGTGAGTTTGAAGGACTTAACAGTATAGAAGAGATTTACCTGTCcttcaacaaacaaatcaatctgACCCCTACATCTTTTATCCACGTTCCCACTCTGAGAACACTAATGCTTGGACGCACTCAGTTTGGCTCACTGGACTTGGATCCATCTCCATTTTCACCTCTGAAAAACCTCAGTATTTTAGATATCAGTAATAATAACTTAGCTAATATAAATAGTGGTCTGTTTAGTAGTcttcagaatttaaaaattCTTAAGCTGCAGCACAATAATTTAGCTCGCCTATGGAAGAATGCCAATCCAGGAGGGCCTGCACTCTTTCTAAAGGATTTGCCTCAGCTTCGTGTTCTTCAAATGGACAGTAATGGATTCGATGAAATCCCTTCTGATGGCTTCAGAGGATTGTTTCAATTGCAAGAGCTTGATTTGAGTCTGAATAACCTGCAAGTATTTCCAGAATCCGTTTTTGACGATCTTACATCTCTCAAAGTGCTTAAGctacaaaaaaatctaatcacGTCGGTCACAGAACAAGTATTCAAACCAGCATTCAGTCATCTCAGTACTCTACATCTGGAGAAGAATCCCTTTGATTGCACGTGTGACAGCATTGCGTGGTTTGTGAATTGGCTCAATTTGACAAACACCAGTGTTCCTCAGTTCGATTCACAATACGCTTGTAAAACTCCTTCCCATTACTTCAACATCTCCATCACCCACTTTGACCCATCGCCCTGCAAAAATCTGGCCCCTTTCGAAGCTTTTGTTTTCACCAGCAGTGTTGTGCTCACCTTCATGGTAGCCACTCTTCTCATTCATTTCCAAGGCTGGAGAATAAAGTTCTTTTGGAACGTTTCGATCAATCGTGTTCTAGGATACAAAGAAATAGACTTAGGGGAGAAAAGGTTTGAATATGATGCATACATAATTAATTCCCAAGACGATTTTGAGTGGGTGGAAAATAATCTGATTCCCTTAGAGGATGAACATTTAACTTTTTGCATTGAAGAGCGGGACTTCTTACCAGGTGGCATGCAACTAGAAGCTGTTGTGGACACAATACCAAAGTGCaagaaaattgtgtttgttgtcaCTGAAGCTCTATTGGGGGATCCCATGTGCAGCAGattCAAGGTTCAGCACGCAATATACCAGATCATAGAAAAAAATCGTGATTCCATTGTCTTGATCTTCCTGGAAGACATCCCAGATTATAAACTGAATCACTTTCTCTTTATCCGGAGGGGGATGGTGAAGTCACGTTGCATTTTACACTGGCCAGTACATGGAGAGCGGGTCTCATCTTTCTATCAACAGCTGAAGGTGGCACTCGGTTCAAGCAACAAATTACATCGATAA

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0051707 response to other organism biological_process
GO:0031349 positive regulation of defense response biological_process
GO:0007165 signal transduction biological_process

KEGG:

id description
K05401 TLR3, CD283; toll-like receptor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126272 lncRNA downstream 272115 25574403 ~ 25574921 (-) True G101115
TU126255 lncRNA downstream 444539 25399982 ~ 25402497 (-) True G101103
TU126186 lncRNA downstream 1102680 24744082 ~ 24744356 (-) True G101045
TU126181 lncRNA downstream 1217253 24629564 ~ 24629783 (-) True G101040
TU126177 lncRNA downstream 1227302 24619120 ~ 24619734 (-) True G101036
TU126360 lncRNA upstream 15665 25995843 ~ 26045342 (-) True G101181
TU126436 lncRNA upstream 270945 26251123 ~ 26253246 (-) True G101242
TU126443 lncRNA upstream 283898 26264076 ~ 26264315 (-) True G101249
TU126523 lncRNA upstream 543481 26523659 ~ 26525730 (-) True G101309
TU126538 lncRNA upstream 593888 26574066 ~ 26574287 (-) True G101317
AMCG00015858 mRNA downstream 20475 25817235 ~ 25826561 (-) True AMCG00015858
AMCG00015856 mRNA downstream 34938 25794539 ~ 25812098 (-) True AMCG00015856
AMCG00015862 mRNA downstream 73022 25405391 ~ 25774014 (-) True AMCG00015862
AMCG00015844 mRNA downstream 1228866 24605666 ~ 24618170 (-) True AMCG00015844
AMCG00015843 mRNA downstream 1246772 24594299 ~ 24600264 (-) True AMCG00015843
AMCG00015855 mRNA upstream 61966 26042144 ~ 26045985 (-) True AMCG00015855
AMCG00015859 mRNA upstream 72807 26052985 ~ 26055189 (-) True AMCG00015859
AMCG00015861 mRNA upstream 82135 26062313 ~ 26117702 (-) True AMCG00015861
AMCG00015857 mRNA upstream 150904 26131082 ~ 26133856 (-) True AMCG00015857
AMCG00015863 mRNA upstream 193491 26173669 ~ 26176937 (-) True AMCG00015863
TU126211 other downstream 846146 24992953 ~ 25000890 (-) True G101067
TU125431 other downstream 5567392 20269829 ~ 20279644 (-) False AMCG00015761
TU125314 other downstream 5870967 19974956 ~ 19976069 (-) False AMCG00015752
TU124970 other downstream 7216371 18628343 ~ 18630665 (-) False AMCG00015723
TU124837 other downstream 8009094 17837580 ~ 17837942 (-) True G99939
TU126708 other upstream 2181659 28161837 ~ 28257732 (-) True G101456
TU126809 other upstream 3124051 29104229 ~ 29106160 (-) True G101540
TU127089 other upstream 4185848 30166026 ~ 30168248 (-) True AMCG00015936
TU127207 other upstream 4661016 30641194 ~ 30724429 (-) True G101853
TU127206 other upstream 4739643 30719821 ~ 30724429 (-) False G101853

Expression Profile