AMCG00015863 (helt,LOC102781250)


Basic Information

Item Value
gene id AMCG00015863
gene name helt,LOC102781250
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26173669 ~ 26176937 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015863
ATGGCCTCCAAGATGAAAGAGCGCAAGAAAACCCCAGTGTCTCACAAGGTGATcgagaaaagaagaagagatcGTATTAACCGGTGTCTAAACGAGCTGGGGAAAACGGTGCCAATGGCTCTAGCAAAACAGAGCTCTGGGAAGCTGGAGAAAGCGGAGATCCTGGAGATGACGGTCCAGTATTTGAGGGCGCTGCACTCCGCCGATTTCCCCAGGGGCAGAGAAAAAGGAGAGCTGTTAGCCGAGTTTGCCAACTACTTCCACTACGGCTACCACGAATGCATGAAGAACCTGGTGCACTACCTGACCACGGTGGAGAGGATGGAGACCAAAGACACCAAGTACGCCCGCATCCTGGCCTTCCTGCAGTCCAAGTCCCGCGTCGTCACAGAGCCCGTGTTCGGCTCCATGGGCGCCCTGCCGGAGCCGGCCGACTACCTGTGCCAACTGCACTCCGCAGCGGACTACCAAAGCCACAGCCCCGGCGACTCCGTCTTCCCGCAGAGCCCGGGCCATTTCCCCTGGCCTGCGCGGAGCCCCGCCATCCCCTACCCGTCCGGGCCTCTGTCCGCGCCGGCGCAGCAGCACGGCGGCTACCTGGCCCCGGTGCAGGGACTGGAGCAGCACTACCTCAACCTGCTGGGCCACTCGCACGCAAACACGTTCAGTTTGTAA

Function

symbol description
helt Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; regulation of neurogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain. Orthologous to human HELT (helt bHLH transcription factor).

NR:

description
PREDICTED: hairy and enhancer of split-related protein HELT

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015863 True 675 mRNA 0.61 4 26173669 26176937

Neighbor

gene id symbol gene type direction distance location
AMCG00015857 slc25a4,LOC102781543,LOC107562743 coding downstream 39813 26131082 ~ 26133856 (-)
AMCG00015861 NA coding downstream 55967 26062313 ~ 26117702 (-)
AMCG00015859 NA coding downstream 118480 26052985 ~ 26055189 (-)
AMCG00015855 NA coding downstream 127684 26042144 ~ 26045985 (-)
AMCG00015860 NA coding downstream 193491 25847036 ~ 25980178 (-)
AMCG00015864 NA coding upstream 58068 26235005 ~ 26240136 (-)
AMCG00015865 NA coding upstream 63336 26240273 ~ 26240725 (-)
AMCG00015871 NA coding upstream 190787 26367724 ~ 26385388 (-)
AMCG00015874 stox2,stox2a,LOC107550915,LOC107684970,LOC107671062,LOC107559650,LOC107748824,LOC106610000 coding upstream 296917 26473854 ~ 26474183 (-)
AMCG00015879 NA coding upstream 299787 26476724 ~ 26494504 (-)
G101181 NA non-coding downstream 128327 25995843 ~ 26045342 (-)
G101115 NA non-coding downstream 598748 25574403 ~ 25574921 (-)
G101103 LOC107702333,LOC107746031 non-coding downstream 771172 25399982 ~ 25402497 (-)
G101045 NA non-coding downstream 1429313 24744082 ~ 24744356 (-)
G101040 NA non-coding downstream 1543886 24629564 ~ 24629783 (-)
G101242 NA non-coding upstream 74186 26251123 ~ 26253246 (-)
G101249 NA non-coding upstream 87139 26264076 ~ 26264315 (-)
G101309 NA non-coding upstream 346722 26523659 ~ 26525730 (-)
G101317 NA non-coding upstream 397129 26574066 ~ 26574287 (-)
G101318 NA non-coding upstream 397448 26574385 ~ 26575210 (-)
G101067 NA other downstream 1172779 24992953 ~ 25000890 (-)
AMCG00015825 LOC106569940,LOC107700648,LOC107717728,LOC108274877,LOC107565247 other downstream 2426966 23743790 ~ 23746703 (-)
AMCG00015800 NA other downstream 3471420 22680694 ~ 22702249 (-)
AMCG00015761 herc3 other downstream 5894025 20227367 ~ 20279644 (-)
AMCG00015752 NA other downstream 6192112 19974956 ~ 19981557 (-)
AMCG00015892 spcs3,LOC106602378 other upstream 1809818 27986755 ~ 27997677 (-)
AMCG00015891 wdr17 other upstream 1864626 28041563 ~ 28069876 (-)
G101456 NA other upstream 1984900 28161837 ~ 28257732 (-)
G101540 NA other upstream 2927292 29104229 ~ 29106160 (-)
AMCG00015936 med28,LOC107702388 other upstream 3986336 30163273 ~ 30168350 (-)

Expression


Co-expression Network