RNA id: AMCG00015899


Basic Information

Item Value
RNA id AMCG00015899
length 376
RNA type mRNA
GC content 0.50
exon number 3
gene id AMCG00015899
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 28420035 ~ 28420653 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTAGGATCCGTCTCCAGACCAGCGGCCGGCTGTCGGAGCAGCTAAGGCCTTTTCCACACTCGAGCGGCGGGGGGAACCGAGATTCAAGCGGCTGTCGGTGGAGGGCAGTGCAAACACCCGGCTTCAGAGCTTTTAAACTGGATGGCGTTCCCAGCAAACGCTCTTCCCGGGGAACTGCTGTGAGGCTCGGAATAAcgtGCAACCACCAAAGAAAGACTGGAACGCATAACCAGCATGATGGAAGAGACAGCAGCTCTTTTAAAGTGTACCGAAAAACCCGTGTAAATTATCGACCGGATGATTGCTGATGCTGAAGTGAATAAACAGGCCTTATTCCATATTAATAAAccacaataaactgaaaagaaataa

Function

GO:

id name namespace
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126692 lncRNA downstream 372548 28041563 ~ 28047487 (-) False AMCG00015891
TU126655 lncRNA downstream 422358 27987108 ~ 27997677 (-) False AMCG00015892
TU126622 lncRNA downstream 750280 27669432 ~ 27669755 (-) True G101388
TU126594 lncRNA downstream 1649767 26768207 ~ 26770268 (-) True G101369
TU126539 lncRNA downstream 1844825 26574385 ~ 26575210 (-) True G101318
TU126852 lncRNA upstream 787644 29208297 ~ 29269160 (-) True G101571
TU126851 lncRNA upstream 795508 29216161 ~ 29219485 (-) False G101571
TU126970 lncRNA upstream 1160196 29580849 ~ 29638632 (-) True G101660
TU127049 lncRNA upstream 1554740 29975393 ~ 29975724 (-) True G101728
TU127171 lncRNA upstream 1915434 30336087 ~ 30339728 (-) False G101828
AMCG00015891 mRNA downstream 350159 28042184 ~ 28069876 (-) True AMCG00015891
AMCG00015892 mRNA downstream 422359 27986755 ~ 27997676 (-) True AMCG00015892
AMCG00015888 mRNA downstream 571241 27841123 ~ 27848794 (-) True AMCG00015888
AMCG00015885 mRNA downstream 1451674 26952466 ~ 26968361 (-) True AMCG00015885
AMCG00015884 mRNA downstream 1566851 26815694 ~ 26853184 (-) True AMCG00015884
AMCG00015898 mRNA upstream 351 28421004 ~ 28430491 (-) True AMCG00015898
AMCG00015904 mRNA upstream 170118 28590771 ~ 28608450 (-) True AMCG00015904
AMCG00015903 mRNA upstream 197923 28618576 ~ 28632799 (-) True AMCG00015903
AMCG00015905 mRNA upstream 225678 28646331 ~ 28655271 (-) True AMCG00015905
AMCG00015906 mRNA upstream 335442 28756095 ~ 28777061 (-) True AMCG00015906
TU126708 other downstream 162303 28161837 ~ 28257732 (-) True G101456
TU126211 other downstream 3419145 24992953 ~ 25000890 (-) True G101067
TU125431 other downstream 8140391 20269829 ~ 20279644 (-) False AMCG00015761
TU125314 other downstream 8443966 19974956 ~ 19976069 (-) False AMCG00015752
TU124970 other downstream 9789370 18628343 ~ 18630665 (-) False AMCG00015723
TU126809 other upstream 683576 29104229 ~ 29106160 (-) True G101540
TU127089 other upstream 1745373 30166026 ~ 30168248 (-) True AMCG00015936
TU127207 other upstream 2220541 30641194 ~ 30724429 (-) True G101853
TU127206 other upstream 2299168 30719821 ~ 30724429 (-) False G101853
TU127273 other upstream 2636114 31056767 ~ 31085062 (-) False AMCG00015950

Expression Profile