RNA id: TU126539


Basic Information

Item Value
RNA id TU126539
length 826
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G101318
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26574385 ~ 26575210 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagatgtagAGAGATTGTTGCACTACAGGTCTTCTTTTGTCAGTATAAAACTCACGACTGTAAACCTTGAAGTTGAATGTTTCATTAGAAGATGCAGCCATAGTGAACTGATGCAAATCCAGTTTCTCCCAGGCTTAAAGAGCAGCtttatgaaacacaaacaagataAAATCCACATACTCCTCTCTAGCGCTCTGTGTGGCTAAATAGTCAGgacaaacaaatacagccaAGAAGATTCCAGAACAAGTAAGACCAGCAGTTTGGGCATCAGGATgcacatataaaacacagatataGTGATACTCTTGTTGTGTGTGCAGCTGTAACACTCCATCTTGCAACCAAGACAAATTTGAATAATAGTCctgaaacatcttggggaaaaaaacccGTTTGGCTCAGGTCCAatgtcaaattattaaaatgagacGTGGAGATGAACTCGCTGCACGATCATCACAATAAGCAACTGGGACACTGTCCTGACTATGAGTTCCTGCCTTCAACCcttaaagcaatacatttccCCACAAACCTCCACTTTTACACCTCATATCCCAAATGCTCATGTTTTATCAAAGAGCTGAGACTTCTATAGACTCTGATTAGACACCTGTTTCACAGTCCTGTCTTCCTTGGTATAGATCCTTCATAGAGATTGATAGAtgactgataaaaaaaaaacatgaaacagcaCTTCCTGTTACAACACCCATCCCTCATGATCTTCTTGAGAAGGTTTGAAGTTGTGACCCATGAGCTGTAAAAAGCAGAGAGGAACAGGAAGGAATTGCACATAACAAGACTAATTTTTGCAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126538 lncRNA downstream 98 26574066 ~ 26574287 (-) True G101317
TU126523 lncRNA downstream 48655 26523659 ~ 26525730 (-) True G101309
TU126443 lncRNA downstream 310070 26264076 ~ 26264315 (-) True G101249
TU126436 lncRNA downstream 321139 26251123 ~ 26253246 (-) True G101242
TU126360 lncRNA downstream 529043 25995843 ~ 26045342 (-) True G101181
TU126594 lncRNA upstream 192997 26768207 ~ 26770268 (-) True G101369
TU126622 lncRNA upstream 1094222 27669432 ~ 27669755 (-) True G101388
TU126655 lncRNA upstream 1411898 27987108 ~ 27997677 (-) False AMCG00015892
TU126692 lncRNA upstream 1466353 28041563 ~ 28047487 (-) False AMCG00015891
TU126852 lncRNA upstream 2633087 29208297 ~ 29269160 (-) True G101571
AMCG00015881 mRNA downstream 4941 26564321 ~ 26569444 (-) True AMCG00015881
AMCG00015880 mRNA downstream 54509 26495364 ~ 26519876 (-) True AMCG00015880
AMCG00015879 mRNA downstream 79881 26476724 ~ 26494504 (-) True AMCG00015879
AMCG00015874 mRNA downstream 100202 26473854 ~ 26474183 (-) True AMCG00015874
AMCG00015871 mRNA downstream 188997 26367724 ~ 26385388 (-) True AMCG00015871
AMCG00015878 mRNA upstream 15108 26590318 ~ 26637382 (-) True AMCG00015878
AMCG00015883 mRNA upstream 196154 26771364 ~ 26790445 (-) True AMCG00015883
AMCG00015884 mRNA upstream 240484 26815694 ~ 26853184 (-) True AMCG00015884
AMCG00015885 mRNA upstream 377256 26952466 ~ 26968361 (-) True AMCG00015885
AMCG00015888 mRNA upstream 1265913 27841123 ~ 27848794 (-) True AMCG00015888
TU126211 other downstream 1573495 24992953 ~ 25000890 (-) True G101067
TU125431 other downstream 6294741 20269829 ~ 20279644 (-) False AMCG00015761
TU125314 other downstream 6598316 19974956 ~ 19976069 (-) False AMCG00015752
TU124970 other downstream 7943720 18628343 ~ 18630665 (-) False AMCG00015723
TU124837 other downstream 8736443 17837580 ~ 17837942 (-) True G99939
TU126708 other upstream 1586627 28161837 ~ 28257732 (-) True G101456
TU126809 other upstream 2529019 29104229 ~ 29106160 (-) True G101540
TU127089 other upstream 3590816 30166026 ~ 30168248 (-) True AMCG00015936
TU127207 other upstream 4065984 30641194 ~ 30724429 (-) True G101853
TU127206 other upstream 4144611 30719821 ~ 30724429 (-) False G101853

Expression Profile