AMCG00015881 (ing1,LOC107671086)


Basic Information

Item Value
gene id AMCG00015881
gene name ing1,LOC107671086
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26564321 ~ 26569444 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015881
ATGCAAAAGAAGAGGCGGTCACAATGTACACCATGGGCGGCTGGGTTGCAGCTGTTTCGGGGCTATTTAAGCCGACCAGGCACCCGTCTCCTCATAGGCATTCTGAAGACCTGTTCACTAGGCCACTCGCTGAGAACGCGTTTCTCCCCGGCGCCTAGGGGAAAGTCCCCGGACCCGTGGCAGAGAGTGCCGCCGCCTCGAAGCCTCCGCCGGCCGCAGCCTCACCCTCCAGCGGCCGAGACGCCTCCGGGCCGAGCCGGGACCTGCGCGCCGGAGCTCGTCACAGCGGGTAGCAACGCAGAGAGCGCAGccgtgacctctgaccccccGCCGAGGAAGCTGCGGGACGTCAGGCTGGCGGATGGAGCTGCAGAGGAGCAGCACAGTAGACACATTATCCCCCCCCATGTCGTCCCCCTGAAGTATGCGCGTCTTGTAACCGTCTCTGCTTCATGCATTGCGGACACAATGCTGGGACACTATCCAAGCGCGGAGAGGAGCCAGCTGGTCGGGTACGTGGAGGATTATCTGGACTGTGTGGAGTCTTTGCCTCTGGACATCCAGAGGAATGTGTCTCTGCTGCGGGAGATCGATACCAAGTACCAGGAAGTCTTAAAAGAAGTGGATGATGTCTATGAGAAGTACAAGAAGGAGACAGACTCGGGCCAGAGGAAGAGACTACAAAACCACCTCCAGAGAGCGCTGATCAGCAGCCAAGAGCTGGGGGATGAGAAGATCCACGTGGTGACCCAGATGATGGAGCTGGTGGAAAACCGGGCCAGGCAGATGGAGGCCCACTCACAGTGCTTCCAAGAGCCGCCCGAGGTGGAGAAGACGGTGGAGAAGGTGAAGCAGGACTTGGTCCCCCCCGAGAGGGCTTCTGCGCGGCGGCCGCGGCGGCAGCGCAACAGCGAGAGCCGAGACTCGTGCCACAACAACGCCAATGGCACGGAGGAGGTGGGCGAGGATCTGGTGCCTAAGGAGAAGAAGTCCAAGTCTGCCAAGAAGAAGAAACGCTCCAAGGCCAAGCAGGAACGGGAGGTTTCCCCCGGGGATTTCAACATCGACCCCAATGAGCCCACCTACTGCCTGTGCAACCAAGTGTCATACGGGGAGATGATCGGGTGTGACAATGGACAGTGCCCCATCGAGTGGTTCCACTTCTCCTGTGTTGGACTTACCTACAAGCCAAAAGGGAAATGGTACTGTCCCAAATGCAGAGGGGACAGCGAAAAGACGATGGACAAAAGCATTGAGAAAACTAAAAAGGATAGAAGATCTAGGTAGTGTTTATATacatgttcattttgttttattttttttccaacagtTGTGTTGCTGATGAAACAATCTGATTTAGAGAGGAGCATATGCCTATGCAATCGTTTAAATCTAGGGTATTAACGTTGCCATATGGCTGCTCTCACTTCACCTGTTGCTGCACTtagccaaaaaaacaaatacaagactGTAACAGGTGCCCTTGCAGCCCAATGGAAAATTGCATAGACCGAAAGAAGACCTCTCTATTTTACTAAAAGATTACTAAAGGTGATATGTTAAACAATACTGCCATTACTACTCTGTATAGgtgctttttttcatttttgtctgaCTCATTACTGAACACAGAAGGATCATGCATCTATAAGGTTTACGTGTTTGTAAACGTCTTTGAAAGTTGGAACAATGATATGACCAGGCATAAGGATACCATCATAAGTGGGGACACATGGTCTTTGGCATTTTCTACATTATGTTGGAAATATCTGTACAGACTGATTTTACTACTTtgtaaaactggaaaatatattttccaactttttttttttttttttatagtcttCCAAACCAGTGGCAGATTTCACTGTTCAGTACCCTGTTTGgtctaatttaattttcttaagttttgcagtatttaaataaacctgTGCCAGTGATgcctgtgtgttattttattaaacccaGAAGAAAACATAGATGCATTTTTGATTGGTTGTTTGCCAATATACAAtagtcattttgttttggttttctcttTTCCTGACTGTTGGTTTCCTAAAGAAAGCCCTGTAAGGTTGTGTAGTCCAACATTTTCACCATGAAGCTGGAAATAGATTTTAAGTCTATTGTGTAATGGAGTCAATAAGGCTTTTACTGTAAGAACTCTTCTTCTGGGGTCATTTCTTACAAAAGTCTGATACTGAGAGATGCTTGTACTGCTATAGTAGTCATGCTGCTAGAATCCCATAGAAAAACATTACCAATGCTGTCGTGTGAGCGTATTAGATCCGTGCCGAGAGAAATCAGTGGTTTGGCAATTGCGATTGAAGCATGGTGACAGATTACATCATTACAAGTAATGACCACTGTCtggagtgagttttttttttttttttttttcttct

Function

symbol description
ing1 Predicted to enable methylated histone binding activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to act upstream of or within chromatin organization; negative regulation of cell population proliferation; and regulation of cell death. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in head and neck squamous cell carcinoma and squamous cell carcinoma. Orthologous to human ING1 (inhibitor of growth family member 1).

NR:

description
PREDICTED: inhibitor of growth protein 2-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K19198 ING2; inhibitor of growth protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015881 True 2408 mRNA 0.48 4 26564321 26569444

Neighbor

gene id symbol gene type direction distance location
AMCG00015880 trappc11,LOC107559294,LOC107731725,LOC106909384 coding downstream 44445 26495364 ~ 26519876 (-)
AMCG00015879 NA coding downstream 69817 26476724 ~ 26494504 (-)
AMCG00015874 stox2,stox2a,LOC107550915,LOC107684970,LOC107671062,LOC107559650,LOC107748824,LOC106610000 coding downstream 90138 26473854 ~ 26474183 (-)
AMCG00015871 NA coding downstream 178933 26367724 ~ 26385388 (-)
AMCG00015865 NA coding downstream 323596 26240273 ~ 26240725 (-)
AMCG00015878 NA coding upstream 20874 26590318 ~ 26637382 (-)
AMCG00015883 tenm3,LOC107737101 coding upstream 201920 26771364 ~ 26790445 (-)
AMCG00015884 LOC106610060 coding upstream 246250 26815694 ~ 26853184 (-)
AMCG00015885 zgc:153720,LOC107552026,LOC107670970,LOC107748832 coding upstream 383022 26952466 ~ 26968361 (-)
AMCG00015888 NA coding upstream 1271679 27841123 ~ 27848794 (-)
G101309 NA non-coding downstream 38591 26523659 ~ 26525730 (-)
G101249 NA non-coding downstream 300006 26264076 ~ 26264315 (-)
G101242 NA non-coding downstream 311075 26251123 ~ 26253246 (-)
G101181 NA non-coding downstream 518979 25995843 ~ 26045342 (-)
G101115 NA non-coding downstream 989400 25574403 ~ 25574921 (-)
G101317 NA non-coding upstream 4622 26574066 ~ 26574287 (-)
G101318 NA non-coding upstream 4941 26574385 ~ 26575210 (-)
G101369 NA non-coding upstream 198763 26768207 ~ 26770268 (-)
G101388 NA non-coding upstream 1099988 27669432 ~ 27669755 (-)
G101571 NA non-coding upstream 2638853 29208297 ~ 29269160 (-)
G101067 NA other downstream 1563431 24992953 ~ 25000890 (-)
AMCG00015825 LOC106569940,LOC107700648,LOC107717728,LOC108274877,LOC107565247 other downstream 2817618 23743790 ~ 23746703 (-)
AMCG00015800 NA other downstream 3862072 22680694 ~ 22702249 (-)
AMCG00015761 herc3 other downstream 6284677 20227367 ~ 20279644 (-)
AMCG00015752 NA other downstream 6582764 19974956 ~ 19981557 (-)
AMCG00015892 spcs3,LOC106602378 other upstream 1417311 27986755 ~ 27997677 (-)
AMCG00015891 wdr17 other upstream 1472119 28041563 ~ 28069876 (-)
G101456 NA other upstream 1592393 28161837 ~ 28257732 (-)
G101540 NA other upstream 2534785 29104229 ~ 29106160 (-)
AMCG00015936 med28,LOC107702388 other upstream 3593829 30163273 ~ 30168350 (-)

Expression


Co-expression Network