RNA id: AMCG00015881


Basic Information

Item Value
RNA id AMCG00015881
length 2408
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00015881
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26564321 ~ 26569444 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAAAAGAAGAGGCGGTCACAATGTACACCATGGGCGGCTGGGTTGCAGCTGTTTCGGGGCTATTTAAGCCGACCAGGCACCCGTCTCCTCATAGGCATTCTGAAGACCTGTTCACTAGGCCACTCGCTGAGAACGCGTTTCTCCCCGGCGCCTAGGGGAAAGTCCCCGGACCCGTGGCAGAGAGTGCCGCCGCCTCGAAGCCTCCGCCGGCCGCAGCCTCACCCTCCAGCGGCCGAGACGCCTCCGGGCCGAGCCGGGACCTGCGCGCCGGAGCTCGTCACAGCGGGTAGCAACGCAGAGAGCGCAGccgtgacctctgaccccccGCCGAGGAAGCTGCGGGACGTCAGGCTGGCGGATGGAGCTGCAGAGGAGCAGCACAGTAGACACATTATCCCCCCCCATGTCGTCCCCCTGAAGTATGCGCGTCTTGTAACCGTCTCTGCTTCATGCATTGCGGACACAATGCTGGGACACTATCCAAGCGCGGAGAGGAGCCAGCTGGTCGGGTACGTGGAGGATTATCTGGACTGTGTGGAGTCTTTGCCTCTGGACATCCAGAGGAATGTGTCTCTGCTGCGGGAGATCGATACCAAGTACCAGGAAGTCTTAAAAGAAGTGGATGATGTCTATGAGAAGTACAAGAAGGAGACAGACTCGGGCCAGAGGAAGAGACTACAAAACCACCTCCAGAGAGCGCTGATCAGCAGCCAAGAGCTGGGGGATGAGAAGATCCACGTGGTGACCCAGATGATGGAGCTGGTGGAAAACCGGGCCAGGCAGATGGAGGCCCACTCACAGTGCTTCCAAGAGCCGCCCGAGGTGGAGAAGACGGTGGAGAAGGTGAAGCAGGACTTGGTCCCCCCCGAGAGGGCTTCTGCGCGGCGGCCGCGGCGGCAGCGCAACAGCGAGAGCCGAGACTCGTGCCACAACAACGCCAATGGCACGGAGGAGGTGGGCGAGGATCTGGTGCCTAAGGAGAAGAAGTCCAAGTCTGCCAAGAAGAAGAAACGCTCCAAGGCCAAGCAGGAACGGGAGGTTTCCCCCGGGGATTTCAACATCGACCCCAATGAGCCCACCTACTGCCTGTGCAACCAAGTGTCATACGGGGAGATGATCGGGTGTGACAATGGACAGTGCCCCATCGAGTGGTTCCACTTCTCCTGTGTTGGACTTACCTACAAGCCAAAAGGGAAATGGTACTGTCCCAAATGCAGAGGGGACAGCGAAAAGACGATGGACAAAAGCATTGAGAAAACTAAAAAGGATAGAAGATCTAGGTAGTGTTTATATacatgttcattttgttttattttttttccaacagtTGTGTTGCTGATGAAACAATCTGATTTAGAGAGGAGCATATGCCTATGCAATCGTTTAAATCTAGGGTATTAACGTTGCCATATGGCTGCTCTCACTTCACCTGTTGCTGCACTtagccaaaaaaacaaatacaagactGTAACAGGTGCCCTTGCAGCCCAATGGAAAATTGCATAGACCGAAAGAAGACCTCTCTATTTTACTAAAAGATTACTAAAGGTGATATGTTAAACAATACTGCCATTACTACTCTGTATAGgtgctttttttcatttttgtctgaCTCATTACTGAACACAGAAGGATCATGCATCTATAAGGTTTACGTGTTTGTAAACGTCTTTGAAAGTTGGAACAATGATATGACCAGGCATAAGGATACCATCATAAGTGGGGACACATGGTCTTTGGCATTTTCTACATTATGTTGGAAATATCTGTACAGACTGATTTTACTACTTtgtaaaactggaaaatatattttccaactttttttttttttttttatagtcttCCAAACCAGTGGCAGATTTCACTGTTCAGTACCCTGTTTGgtctaatttaattttcttaagttttgcagtatttaaataaacctgTGCCAGTGATgcctgtgtgttattttattaaacccaGAAGAAAACATAGATGCATTTTTGATTGGTTGTTTGCCAATATACAAtagtcattttgttttggttttctcttTTCCTGACTGTTGGTTTCCTAAAGAAAGCCCTGTAAGGTTGTGTAGTCCAACATTTTCACCATGAAGCTGGAAATAGATTTTAAGTCTATTGTGTAATGGAGTCAATAAGGCTTTTACTGTAAGAACTCTTCTTCTGGGGTCATTTCTTACAAAAGTCTGATACTGAGAGATGCTTGTACTGCTATAGTAGTCATGCTGCTAGAATCCCATAGAAAAACATTACCAATGCTGTCGTGTGAGCGTATTAGATCCGTGCCGAGAGAAATCAGTGGTTTGGCAATTGCGATTGAAGCATGGTGACAGATTACATCATTACAAGTAATGACCACTGTCtggagtgagttttttttttttttttttttcttct

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K19198 ING2; inhibitor of growth protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126523 lncRNA downstream 38591 26523659 ~ 26525730 (-) True G101309
TU126443 lncRNA downstream 300006 26264076 ~ 26264315 (-) True G101249
TU126436 lncRNA downstream 311075 26251123 ~ 26253246 (-) True G101242
TU126360 lncRNA downstream 518979 25995843 ~ 26045342 (-) True G101181
TU126272 lncRNA downstream 989400 25574403 ~ 25574921 (-) True G101115
TU126538 lncRNA upstream 4622 26574066 ~ 26574287 (-) True G101317
TU126539 lncRNA upstream 4941 26574385 ~ 26575210 (-) True G101318
TU126594 lncRNA upstream 198763 26768207 ~ 26770268 (-) True G101369
TU126622 lncRNA upstream 1099988 27669432 ~ 27669755 (-) True G101388
TU126655 lncRNA upstream 1417664 27987108 ~ 27997677 (-) False AMCG00015892
AMCG00015880 mRNA downstream 44445 26495364 ~ 26519876 (-) True AMCG00015880
AMCG00015879 mRNA downstream 69817 26476724 ~ 26494504 (-) True AMCG00015879
AMCG00015874 mRNA downstream 90138 26473854 ~ 26474183 (-) True AMCG00015874
AMCG00015871 mRNA downstream 178933 26367724 ~ 26385388 (-) True AMCG00015871
AMCG00015865 mRNA downstream 323596 26240273 ~ 26240725 (-) True AMCG00015865
AMCG00015878 mRNA upstream 20874 26590318 ~ 26637382 (-) True AMCG00015878
AMCG00015883 mRNA upstream 201920 26771364 ~ 26790445 (-) True AMCG00015883
AMCG00015884 mRNA upstream 246250 26815694 ~ 26853184 (-) True AMCG00015884
AMCG00015885 mRNA upstream 383022 26952466 ~ 26968361 (-) True AMCG00015885
AMCG00015888 mRNA upstream 1271679 27841123 ~ 27848794 (-) True AMCG00015888
TU126211 other downstream 1563431 24992953 ~ 25000890 (-) True G101067
TU125431 other downstream 6284677 20269829 ~ 20279644 (-) False AMCG00015761
TU125314 other downstream 6588252 19974956 ~ 19976069 (-) False AMCG00015752
TU124970 other downstream 7933656 18628343 ~ 18630665 (-) False AMCG00015723
TU124837 other downstream 8726379 17837580 ~ 17837942 (-) True G99939
TU126708 other upstream 1592393 28161837 ~ 28257732 (-) True G101456
TU126809 other upstream 2534785 29104229 ~ 29106160 (-) True G101540
TU127089 other upstream 3596582 30166026 ~ 30168248 (-) True AMCG00015936
TU127207 other upstream 4071750 30641194 ~ 30724429 (-) True G101853
TU127206 other upstream 4150377 30719821 ~ 30724429 (-) False G101853

Expression Profile