RNA id: AMCG00015947


Basic Information

Item Value
RNA id AMCG00015947
length 6214
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00015947
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 30804089 ~ 30823051 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acacgcacacacactgacatactaacacactgactcacacaggTGTGAAACCTTGCTTTACTCTTTCTCTTTTCCCCCGTGTTCACTCCACAGCCATGAAGTTCAGCCCCGCTTTCGCTGCTGCCTTCCTGTGGCACGTTGCTGCTAGCCTGACCTGGGCTGCCAAAATCGTGATTGTGCCTCCTATCATGTTCGAGAGCCACCTGTACATATTTAAGACTGTGGCGGCCGCTCTGCACCGGGAGGGCCACGACACCGTGTTCCTGGTGTCCGAGGGCCGGGACGTGCCCCCATCCGAACACTACCGCCTGCAGCGCTACCCGGGCATCTTCAACAGCACCTCCGCGGACAACTTCCTGCAGTCTAAGATGAAGAACATCTTCTCCGGCCGCCTGACCGCCCTGGAGCTCTTTGATATCCTGGAGCACTACTCCCGGAACTGTGACGTCATGGTGGGCAGCGAGGCCGTCATGTCCCGGCTGCGGGAGGAGCGCTTCGACCTGCTGCTGGTCGACCCCAACGAGATGTGCGGCTTTGTGATCGCGCACCTGCTGGGCGTGCGGTACGCCGTGTTCAGCACCGGGCTCTGGTACCCGGCCGAGGTCGGGGCGCCGGCACCTCTGGTCTATGTCCCTGAGTTCAACTCCCTCCTGACAGACAGGATGACTCTCTTCCAAAGGATTACAAACACGGCCGTGTACGTGGTCTCGCGCTTCGGCGTGCAGTTCCTGGTACTACCCAAGTACGACCGGATAATGCAGAAGCACCACATACAGCCCGAGGTGTCCATGCACGACCTGGTGCAGGGGAGCCGCCTGTGGATGCTGTGCACCGACATGGCATTGGAGTTTCCCCGGCCCACCCTACCGCATGTGGTGTACGTTGGGGGGATCCTGACTAAACCTCCGAGCCCGCTCCCTGATGATTTTCTGTCGTGGGCCAACAGAGCCGAGGAGAACGGGTTTGTGCTCGTGTCGTTTGGTGCCGGTGTCAAGTACTTGTCTGACGATATCGCGAGGAAACTGGCTGGAGCTCTGGGCCGACTTCCTCAGAAGGTGATATGGAGGTTCAGGCAGCGTGCTCAGGTGCTGTCCAATATCCACAAGGACCAACCCGGACACCCCATCAGCCGCGCGGTCTACTGGATCAATTACATCCTCCGGCACGACGGCGCGGACCACCTGCGCTCCGCCGTCTACGAGGTCCCTTTCTACCAGTACTTTTTGCTCGACGTGGCAGCAGTGCTGACCCTCGCCATCCTCGCCATCCTCTACACCGTGTACCGGATAGCGAGACTGATCACGGCCAGGATGTGTCCCGCCTCGGTGGCGCTTAAGGCCAACGGACACTGTTACAACGGGATCCCCAACGGGAAGCACAAAAGGAACGGCCACATCAAGCACGACAAGAAGGTAAAATAGGAGCGTTCGCAGGCGCTCCGCTGGTGTGAAACTCAATGCAAGGGACAGCATCCGACATCTGTCATGCACTCGTAACAAAGCTGGTGTTTAAAGGGGTGGAGAAAAGTGAAGGTTaaagaggaaaggaaaacagTGATTCGGAGGCCAAAATCCATATCTAAAAATCACTCATTCaacttttttccttcagaaCACCTTTTCCTGTAGAAAACCCGACTTGTTGCGGCCGAGGCGAACAGGCGAGGTGTCTAACGAATGTCGACTCTGTCCTTGAAACTgagatttaataaattaatttaaattatctttttttttttttttaagtgatacTTTATAACATTAAACTACTGTACTGCTGAACATcaggtaaatatttaaaacagaaaaccaaatCTCTTCTATTTATTACTATTCCACTAATGtcctttaaaatatgttgttttggtTTGAGAAGCACactcccccccgccccacctgcatctgttagtttgttttattttttcactttttaaaaccCAAAAGGCcttcctttaaatatataccTGCTCCCAACCCCCTGACACAcaggtgcattgtgggtgtTCACGTGTTCTTGCAGCTACTAGGAGCCAACGACACTTGAATACATGGGATCCAACGAGAGAATCCACACTTTGCAGTAGCTGTAAAAATAGTGTTTTGCTACAGTTTTACACTGCATTTGTTAGAAGAAGAGTAAACCATCAATGAAATAGACGAGTGGTGTCTTACTGTGCACCACAGACGCAGCAATTTTACCTCATGTTTAAAACGATGCTACAAGTAGTTTAGGGGAAGATACGTTCGATAAAACTGTTCTAATCGTAGTAAATAACAAATGTCTCAGTCTGCATTGGGAACTGTCAATGTCTACCttgtatgtgtctgttttatAGAGTGAAAACTAGCAATAGTTAATCattgacatttcattttaacttattgcatttttgtaattgctACAGTTGTTTAAAACTGTCagtttttaacatattttcatGCGGTTATATAAGAATGGCTCTGCTGTTGTCCAGTACTTTGGCGTCAAGTTTCAGACGTTAAAGGAAAAAAGGACATTTTGAGAGATTACTTTCTTATACTTTTCAAGTTTCTTCTTTTGTATTGTGTCCCAGGTTGTTTGATGTACGCATGCTTTGCTTGACTTCATATCCCAATTATAGGTATGTGAATAAGTAAAATGCCCAATTTGTGCTGTGAACATACTCATATGTAAAGAATATCAGTCATAATAATAGACAAAATAGTTACTATTTTCATGTCAGTATGTTATATACACCAACTTTAAAAGCTGCATCTTTacaaaagccattttaaattatataaacataGAATCTaagtaaaagtaatattttatatttatataaatatatatatgtgtgtatgtatgtatatatatatatatatatatacatatacacacacatatagatatagacatatatatttatgtatgtaaattacatttttacagttaaaGAAAACTTGaatatgaaaggaaaacaaatctgaagtcTCTTTAGAAATgattgtgtgcaagtgtgtgtgtgttatattgtGTTAAACTAGGTTCGTTTCTGTCCTTAAGCTGCTTATGAATATAAAATCATGCCTAACTAatacttattaaaatgtacacaaaaatgtcttaaataaatacatatgaaaagaAAGATAAGAAAACAGTGAAGAAGCAACATTGACAAGgttatgtttatataaaatatcttATCAATAAAGTCTTAtgaataaatactattttaaccatttagaaataaatcaattggGATTAATAAAtctgtggaaataaatatatatgttttatgcaGTGATAATGCAGGGCAGCTTTATGTGTACGTTCCTGCCACTCCTGGGTGACAGTTCTGGTTCTGGATTCGGTCTAGAGTGATTGTAATCGGTGCCGAATAACTCTCAGCTGGTGGCTGGAGGCGGGTCAGATTGTTCCTTCGTGTCTGAGGGCTTCAATGCTAAGTACACATCTGACTCGAGGAAAACCGAAAAACGTCAAGTATTTTACAGATTCACCGTCACCAAGCTGCCTTGCTCAAAGAGGAAAAAGACCAAGTGAATTTTCCAGAACCACCCTCAGCAAAACATCTGGAGCCGAATGCACATTTTGCCGGGCGGTTTGTGGGTCATCAGGCACTGATCGATGCGCTTACatcaagtgttttttatttgcttagtttcaatttaaacaatgtttgtATTATATTCGCTTTCAGCTGCTCAGTTTGTGGTTTGATATTGGACATATTTCTGCTATCAGTCGGTCTAAACCGCTTGCGATGGCATGCGACTCTTCCTGCTTCCACATTCCTGAGGCTCACCTTCAGTACAATATCTCAGCTCCTCTTTCACAGGCGCTCACGCCCCCACGGCAGTCCCGTGGGTGCACGTGAACTCTCATCTCCCGGGCACAGGACACGGCTCTTGAACCTGGTGCGGGGCCTGACACCGCTGTGTCACAGAGCGACGGGGATGAATCGTCTTCTGTGCTCTGAAATGCTTTAACGCACACGGAGTGATCACAGGACTCCAGATGAGCGCTGGAGATTCCCCAGATTGAGTTAAGATCAATCGATTCATCCTGCGCTGCAACCGGGCATGACAGAGCCAGTATTGGGGGTCAGTAACGGTGAACTGTGATTGTAGCCCCCACAAATTGGGCATCCCAGAGTCGGCACATACTTGATGAATTGCCTGACCCAGACACAAACAGACCGCCCAGTAAAATGTGCTTTACACTCAGCTTGTGGCTCTGCTATACAACACTGTGCTGTCAAACGTATCTCCCTGAAACCCTTGTTACTGTCAATTGTTAACCCATTGGCTGCTGCTCTCCGCCTGCTCTGTGCGCTGTGTGTGACATCCTGGGCAGATTGAGTGGAGGCATGAAAATACTGATCTGGATCAATGAAAGATGcagcatgtttatttatatctctgtgattatttattttttatagagaAAAGTGTTGTTTGTTGCGTTCGTAAAGGGCATAAAGCCCACAGAAGAGATCATAACAGAAAATCCCATGAAGGTTAGCTACTGAAGTTGTCCTCTCTGCTCTGCGTTTTAAAATCGCTCGTATCCCAACCAGCTTTGAAGGTGTGGACCGTGTGCAACCACCTGCTTGATGTCTCGTGTGGTGTATGTAGAAATGTCATGTCTTTGCCaacattttgtgttgattttgtgtCTTTAAGTCATTAGAACCATAAATCATCTTGGCACAGAAGCTAGTGGTCTTGCTGTCGTCAGTTTCCCTTTTCAGATGAGGTTTGCGAAGGCTTGCCTGCCAGAGTGTCACACACATTGTGAATGTCCTGAAAAAAGCTCTTCTGTGGTTCAGGCCCAGCTGTCACTTTTCAATTTGCATAAGTGGTTCTGTGGTTTGGTTTTGGCTCCAAACTGATGAAAGGTGCGATAGATAGAgcggctgtgttgtgtttcagtcagaaccaaaataatgttgtgttgttgttttttctgtttttgtcatcTTGAATAAGCTTAATAAATGTTTCCTCTTCATAGGATTTCAAACCCTGggacactttttattttccgactttttaattttgtttttaatgcagctgATTTCCTTTGACTTTTTAAacgtttaaatgtttaaaagtgtTTACTTTTAGTTATTGCACTAAATCTTATAGAGACTATTTATGTGGTATTATAATACATGACTGACACGAGCTACGGGCCATACCGAATAAACTTTAATTGTGCTAAGTCAACACCTGCTTTTTCTGATCTACAAAAGCCTAacaaacatatatgtgtgtgtgtctgtgttaatCAACAAAACTGGAAGAAATACTATGGTAGAAAATACCATTTTATATCGATCTGtctatctgtatgtatgtatgtatgtatgtatgtatgtatatatggtgTTTTTCATCTATTCAAAAAGGGGTGGTCAACTTAACATGCTTTTAAAGTTTTACGAACATGGCCCTAAGCCTCTTTAATAAACTGAGGGGAAGCAATAATATACAtacctgtaaaaaaacaaatgacaaaacagaaacacacttgTGGCCTTGTCTTTGTAATATCATCTCACTATGAGCCTTGTTCAAACTAAAtctgcaacagcaacaacaaaaaagacttACTGTCGATACTTGAATAAGTGCATTTGAATTGAATCGCGCTTGCAGATGCATGTAGGCTATGAACAGAGAGATgagcaatacaataaataaaatcttgtgTACGAATGTGTCctggttgatgtttttttttcttataactTCAGTATTAATCATTCAAAGGGGTGAGCAGTTACAATGGTGCTACAAACAGCGCTTAAGAGCATAAGAAGTTGccttctctcttctctgtaCCATGTGACCACAGATGCCTGTCCGTCGCTCGGCTACACTGTTTCTTCCAGACAGCAATAGTCAGATAATCAAAGAAAGGAAGCAAACCAACATCCGGTCCATAGCGCTTGCTGTGGCCGAGCTGTGAGCTGAGCAGTGCCACCGCAGCGCCACCTCGTGGTCCCCAACGCCAAGCTGTCACACAAATCGGACTGTTGAATCGATTTCATGGGTGCTGGCtttggatttctttttctttttctttttctaattggTATCTGTTGATGTTTGTTCAGactgtaaatataatatgtaataattataatgcttataataaagaaaaataactaatgcttaataaacatttacatattttgtttgca

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K04628 CGT, UGT8; ceramide galactosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127213 lncRNA downstream 43665 30754887 ~ 30760424 (-) True G101859
TU127209 lncRNA downstream 57281 30746569 ~ 30746808 (-) True G101855
TU127183 lncRNA downstream 407847 30394051 ~ 30396242 (-) True AMCG00015942
TU127184 lncRNA downstream 407847 30394051 ~ 30396242 (-) False AMCG00015942
TU127171 lncRNA downstream 464361 30336087 ~ 30339728 (-) False G101828
TU127269 lncRNA upstream 69277 30892328 ~ 30970887 (-) False G101911
TU127270 lncRNA upstream 143641 30966692 ~ 30970887 (-) True G101911
TU127354 lncRNA upstream 850433 31673484 ~ 31674526 (-) False AMCG00015962
TU127359 lncRNA upstream 884350 31707401 ~ 31707840 (-) False AMCG00015960
TU127388 lncRNA upstream 1001384 31824435 ~ 31824696 (-) True G101996
AMCG00015946 mRNA downstream 37982 30749034 ~ 30766107 (-) True AMCG00015946
AMCG00015945 mRNA downstream 331661 30465368 ~ 30472428 (-) True AMCG00015945
AMCG00015944 mRNA downstream 353935 30437497 ~ 30450154 (-) True AMCG00015944
AMCG00015943 mRNA downstream 384372 30400376 ~ 30419717 (-) True AMCG00015943
AMCG00015942 mRNA downstream 407782 30394055 ~ 30396307 (-) False AMCG00015942
AMCG00015948 mRNA upstream 28770 30851821 ~ 30866786 (-) True AMCG00015948
AMCG00015950 mRNA upstream 195560 31018611 ~ 31061728 (-) True AMCG00015950
AMCG00015951 mRNA upstream 299617 31122668 ~ 31130956 (-) True AMCG00015951
AMCG00015952 mRNA upstream 327590 31150641 ~ 31154111 (-) True AMCG00015952
AMCG00015954 mRNA upstream 340917 31163968 ~ 31171317 (-) True AMCG00015954
TU127207 other downstream 79660 30641194 ~ 30724429 (-) True G101853
TU127206 other downstream 79660 30719821 ~ 30724429 (-) False G101853
TU127089 other downstream 635841 30166026 ~ 30168248 (-) True AMCG00015936
TU126809 other downstream 1697929 29104229 ~ 29106160 (-) True G101540
TU126708 other downstream 2546357 28161837 ~ 28257732 (-) True G101456
TU127273 other upstream 233716 31056767 ~ 31085062 (-) False AMCG00015950
TU127284 other upstream 348856 31171907 ~ 31175745 (-) False AMCG00015955
TU127312 other upstream 444353 31267404 ~ 31287793 (-) True G101939
TU127348 other upstream 806197 31629248 ~ 31629566 (-) True G101963
TU127411 other upstream 1085438 31908489 ~ 31945175 (-) True G102017

Expression Profile