RNA id: TU120566


Basic Information

Item Value
RNA id TU120566
length 1239
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G96696
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6355020 ~ 6362409 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAAAAAGGCCGGTAACAGTCATGGTGGTGGGTTTGGAAAATGTAgtcaaaatatatgcaaaacCTTCAGAGGACATTACTTTGCTGCCTCCAGCCATTTGGATAATTCTTAGTCTGAATCATTATGCAAAGCACTTTTAGAGAATCATTCTCTTCCCATTACAGGTTGATAGTATTACCTGCAGGATGAACACTGCCTAATAATGATCTTGACTCACATCGTTGGACTTTTCCTACTTTTGAGAGgAACAGGAGCAAAGTCCTCCCTGGCTACTCCTGATCATCACTAATTCCAGAAACAACCCCCACTCTGCACACCATCCCTTAAACAATCAGACATTTATATcctgttaattatttattctctcATCTGTTTAGTTGAATGAAGGAGGCCTTGAACAAACAAGGCCACCTGTGTAATTCCAGACAGCTGCGTCCTCTGTACCGTtgagaacaaagaaaacacctGCCTCATTGAAGGACAGTTTGCCAGGAAAATATATCCGCTCGGTCGCAGTCTGTCGGTTAGAGCTTTAAATGTCCTGAGAGCCATCAGGTGGCTGATGATTAGACCTGCTGTAACAAACTGTGCCCCTTGGAAAAAATGGTGACCCCTTCCTTATTGAGAGCAAATACACACCAGAGTCACAAAAGTGGGTGTGTATGCAGAGGGGGACACCCTAGCAGTAAAAGTTTGGTCATTTTTGGATTTACAGGGGGGGTCACACATTTTTCCAGTGGCTGTAAGAAATTGTGCCCCTTGGAAAAAATAGTGACTTCTTCCTTAGTGACAGAAAATACACACTAGTCACAAAAGTGGTTGAGTGTGCACACAGATAGCAAATAATTGACcattataatttcctttaaagttcaaagtttctgttattgcttcacctgtgtgtgtgatagttgtgaaaagctgtcaggaattaaattacttacaaataaataagtaaataaacatttagaagaTTGTACTGCATTTATGTTGCTGAAGTGTATGATGTCTGCATACGTTTACAAGTGGTATTACTTGTGTAGTAAGAAGAAATGAATATAAACAAGAGTCTCAATGCGTttgtctgtgaaaaataaacGTACATcgtacaatacatacataattaccTACATGAATCCCTTGTGTTacttacacaaaataatatgttaCAGTAAGAGCAGATCAAATACAGAATAACTTCAGTACTAAGAAGTGCAACTTTAACTATGTATATAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120513 lncRNA downstream 126244 6228514 ~ 6228776 (-) True G96653
TU120510 lncRNA downstream 131391 6157103 ~ 6223629 (-) True G96650
TU120497 lncRNA downstream 234018 6120654 ~ 6121002 (-) True G96643
TU120496 lncRNA downstream 235367 6118621 ~ 6119653 (-) True G96642
TU120469 lncRNA downstream 282941 6025368 ~ 6072079 (-) False AMCG00015257
TU120631 lncRNA upstream 48238 6410647 ~ 6412709 (-) True AMCG00015271
TU120734 lncRNA upstream 508053 6870462 ~ 6871498 (-) True AMCG00015283
TU120743 lncRNA upstream 528826 6891235 ~ 6892166 (-) True AMCG00015285
TU120746 lncRNA upstream 532671 6895080 ~ 6896427 (-) False AMCG00015285
TU120800 lncRNA upstream 624991 6987400 ~ 7063937 (-) True G96873
AMCG00015261 mRNA downstream 210296 6124100 ~ 6144724 (-) True AMCG00015261
AMCG00015259 mRNA downstream 258002 6084877 ~ 6097018 (-) True AMCG00015259
AMCG00015260 mRNA downstream 271529 6078223 ~ 6083491 (-) True AMCG00015260
AMCG00015257 mRNA downstream 282895 6064969 ~ 6072125 (-) True AMCG00015257
AMCG00015256 mRNA downstream 290961 6049524 ~ 6064059 (-) True AMCG00015256
AMCG00015267 mRNA upstream 6345 6368754 ~ 6382439 (-) False AMCG00015267
AMCG00015271 mRNA upstream 48246 6410655 ~ 6419481 (-) False AMCG00015271
AMCG00015270 mRNA upstream 68209 6430618 ~ 6440642 (-) True AMCG00015270
AMCG00015272 mRNA upstream 126033 6488442 ~ 6501219 (-) True AMCG00015272
AMCG00015273 mRNA upstream 152957 6515366 ~ 6525807 (-) True AMCG00015273
TU120487 other downstream 290861 6049477 ~ 6064159 (-) False AMCG00015256
TU120336 other downstream 597911 5755654 ~ 5757109 (-) False AMCG00015244
TU120133 other downstream 1281214 5054901 ~ 5073806 (-) False AMCG00015211
TU120090 other downstream 1349508 4985572 ~ 5005512 (-) False AMCG00015211
TU120625 other upstream 15481 6377890 ~ 6384620 (-) True AMCG00015267
TU120659 other upstream 336448 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 555357 6917766 ~ 6921641 (-) False AMCG00015288
TU121101 other upstream 1423678 7786087 ~ 7786442 (-) True G97125
TU121448 other upstream 1768898 8131307 ~ 8134115 (-) False G97411

Expression Profile