RNA id: TU120800


Basic Information

Item Value
RNA id TU120800
length 918
lncRNA type read_through
GC content 0.41
exon number 2
gene id G96873
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6987400 ~ 7063937 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATACATTAAGCAGAGCAGAGCTGGCAGCAGTGGTACCCGTACTGGAGACATCCTGAGCCCCTTCTGTAGGTTattagtgtatgtatttattgatttcttgaACAACCTCAAGCTTCTTTAGTCTCGGGCAGAGAGTGAAATGTGGACACAAGGCAGGCCTCAAGTTTCAACAACTCAGCTGTCTCGGTTCTTCTAGTTTTAATCCACAAGCAAGTGTCGACAACAATGTCTCGACGTGATGGTTTTTGTTGTCGTCTCCAAATGTAAGCCCTTTCTGGTTATGAAGGCCTATCCTGACTGTTCAGATTTATTTTCGGTCACAAATGTCAGTTCTGGTCAACAGTCCAGATGTCTGCAGGTTCACAATCCAAGGAAAAGTAGAAAATCTATCGATGCGATTACAGTGTCGGTATAGTAGCCTACTTAGTCAATGTAGCAGTTTGTGTTGGCCTAAACCAttgaacacattatttttcatttgggtTGTAAACAGTAAACGGTCTATTACATTCGTAAACATTCcttggaaaaatacattgtttggaAATTAGGATTAAATGATGCTGGATTATTTCCACGGTTTAAATCTGTACAATATGTGTTAGAGTACACTGTTTTAAGAGGGGGAAATAGCTTGATTCAAaatgaagggagaaaaaaaattctTCCTTCTCAGTGTTTTACAATAATAGCCAATGGAGTAGcttattgctttttttccccagacaCTTTATGAATTAAAGTGCTCCTGGTGAGAATTCACCAATACTCCTGAATAGACGCAGCTGCTCAGAGTTGggttttgtgtgcttgtgtccATGGACCGGCTCAGATTTTGCTGGGAGAAGAGCAGAGCGCACATGCGTGGAGAGGGAGACGTTTCTGGGACATTCGCTCCTAAATTCgatttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120746 lncRNA downstream 90973 6895080 ~ 6896427 (-) False AMCG00015285
TU120743 lncRNA downstream 95234 6891235 ~ 6892166 (-) True AMCG00015285
TU120734 lncRNA downstream 115902 6870462 ~ 6871498 (-) True AMCG00015283
TU120631 lncRNA downstream 574691 6410647 ~ 6412709 (-) True AMCG00015271
TU120566 lncRNA downstream 624991 6355020 ~ 6362409 (-) True G96696
TU120912 lncRNA upstream 208974 7272911 ~ 7277373 (-) True G96967
TU120933 lncRNA upstream 272078 7336015 ~ 7337227 (-) True G96984
TU120938 lncRNA upstream 286572 7350509 ~ 7350785 (-) True G96988
TU120947 lncRNA upstream 298448 7362385 ~ 7364999 (-) True G96994
TU120944 lncRNA upstream 298553 7362490 ~ 7364999 (-) False G96994
AMCG00015286 mRNA downstream 18656 6953319 ~ 6968744 (-) True AMCG00015286
AMCG00015288 mRNA downstream 63686 6917679 ~ 6923714 (-) True AMCG00015288
AMCG00015285 mRNA downstream 92236 6891430 ~ 6895164 (-) False AMCG00015285
AMCG00015287 mRNA downstream 101946 6884044 ~ 6885454 (-) True AMCG00015287
AMCG00015283 mRNA downstream 109666 6870743 ~ 6877734 (-) False AMCG00015283
AMCG00015296 mRNA upstream 21759 7085696 ~ 7100008 (-) True AMCG00015296
AMCG00015301 mRNA upstream 63368 7127305 ~ 7213377 (-) True AMCG00015301
AMCG00015299 mRNA upstream 153339 7217276 ~ 7223945 (-) True AMCG00015299
AMCG00015300 mRNA upstream 167505 7231442 ~ 7231936 (-) True AMCG00015300
AMCG00015303 mRNA upstream 230925 7294862 ~ 7297585 (-) True AMCG00015303
TU120782 other downstream 65759 6917766 ~ 6921641 (-) False AMCG00015288
TU120659 other downstream 287043 6698857 ~ 6700357 (-) True G96766
TU120625 other downstream 602780 6377890 ~ 6384620 (-) True AMCG00015267
TU120487 other downstream 923241 6049477 ~ 6064159 (-) False AMCG00015256
TU120336 other downstream 1230291 5755654 ~ 5757109 (-) False AMCG00015244
TU121101 other upstream 722150 7786087 ~ 7786442 (-) True G97125
TU121448 other upstream 1067370 8131307 ~ 8134115 (-) False G97411
TU121510 other upstream 1346050 8409987 ~ 8411882 (-) True G97455
TU121587 other upstream 1477251 8541188 ~ 8543180 (-) False AMCG00015374
TU121599 other upstream 1516362 8580299 ~ 8581101 (-) False AMCG00015372

Expression Profile