RNA id: TU122081


Basic Information

Item Value
RNA id TU122081
length 515
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id G97906
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9383508 ~ 9384124 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGGATGCCGGGGGGTTCAATGACATCATTACATGAACCACTGCAACAGCTGTCGGGCAATTAAAAGTTCAGCTGTGGCGTCGGTTTTAAATTAGACCTCTGCGGGGCCCGTCGTGCTCTGGGGCACTACCCCGGATACCGAATAGGTTCATTTGGGAGAAGCGCTCTTGGTAAAAGGATTTTCACAGCATAAACGCGGCGTGTCTGCAGAGCGGCTGTCCGGGGGACCTGCGTACCTTGCACTTCGCCGAACACCTCGAAATCCACCGACACCAGCGGCGCCGGCGAGCTCATGAGTTTCACGAAGCCACCGAAATGACACTTATCGGCGGGATTCCGCACTGACATGCCCGACGTCGCCAGGTGCGCTATGTGTCTACTCCGCCACTGCGCCACTCTGGCAGGACACGCAGATATTTGAGCCACAATGGCGCCGGACTGGGCGAGGTTTCCTCCTCAGCGCAGGCGAATGCCATCTCCACCTGACCCAGAGACACGCACGCCCCTTTGACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122038 lncRNA downstream 227061 9154856 ~ 9156447 (-) False AMCG00015415
TU122021 lncRNA downstream 273458 9094155 ~ 9110050 (-) False G97860
TU122020 lncRNA downstream 273458 9107281 ~ 9110050 (-) True G97860
TU121954 lncRNA downstream 311370 9067943 ~ 9072138 (-) True G97805
TU121974 lncRNA downstream 428091 8954513 ~ 8955417 (-) False AMCG00015400
TU122199 lncRNA upstream 297041 9681165 ~ 9681682 (-) True G98006
TU122205 lncRNA upstream 321603 9705727 ~ 9706031 (-) True G98012
TU122260 lncRNA upstream 429277 9813401 ~ 9815466 (-) True AMCG00015460
TU122391 lncRNA upstream 494335 9878459 ~ 9879140 (-) False AMCG00015471
TU122395 lncRNA upstream 545438 9929562 ~ 9930787 (-) True G98126
AMCG00015431 mRNA downstream 36238 9330385 ~ 9347270 (-) True AMCG00015431
AMCG00015429 mRNA downstream 71035 9300198 ~ 9312473 (-) True AMCG00015429
AMCG00015430 mRNA downstream 85242 9290446 ~ 9298266 (-) True AMCG00015430
AMCG00015423 mRNA downstream 110059 9263637 ~ 9273449 (-) True AMCG00015423
AMCG00015424 mRNA downstream 125407 9254087 ~ 9258101 (-) True AMCG00015424
AMCG00015439 mRNA upstream 115041 9499165 ~ 9502673 (-) True AMCG00015439
AMCG00015441 mRNA upstream 121033 9505157 ~ 9516232 (-) True AMCG00015441
AMCG00015438 mRNA upstream 149399 9533523 ~ 9534939 (-) True AMCG00015438
AMCG00015440 mRNA upstream 166736 9550860 ~ 9557706 (-) True AMCG00015440
AMCG00015442 mRNA upstream 175155 9559279 ~ 9566100 (-) True AMCG00015442
TU122072 other downstream 27776 9353217 ~ 9355732 (-) True G97897
TU122046 other downstream 204841 9176218 ~ 9178667 (-) False AMCG00015419
TU122010 other downstream 343367 9038614 ~ 9040141 (-) True AMCG00015409
TU121992 other downstream 423364 8956415 ~ 8960144 (-) False AMCG00015400
TU121969 other downstream 552974 8829302 ~ 8830534 (-) False AMCG00015394
TU122362 other upstream 453378 9837502 ~ 9839510 (-) True G98094
TU122506 other upstream 806297 10190421 ~ 10192287 (-) False AMCG00015497
TU122509 other upstream 812494 10196618 ~ 10198654 (-) False AMCG00015493
TU122510 other upstream 812494 10196618 ~ 10198654 (-) False AMCG00015493
TU122511 other upstream 812494 10196618 ~ 10198654 (-) False AMCG00015493

Expression Profile