RNA id: TU124360


Basic Information

Item Value
RNA id TU124360
length 4065
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G99565
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 15879418 ~ 15883521 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aGTAAAGCAATGTTTGATGCTGGTagcctttaaaaaacaatacatatatgcaacaattaaaacaatgatgctggtagtattttaaaaaacaacaatacatacattcaagTAAAGCAATGTTTGATGCTGgtagtattttaaaaaacaacaatccatGCAtgctattaaaacaattttgatGCTGGTAGcctttaaagaaacaataaatacatgcaacaACTAAAACAATGCTTGATGCTGTTAgtattgtataaaacaataataaatacattcaattcaaACCATTCTGATGCTGgtaacaaaacatttagaagaccacaacagtaataaacatttaatgaattATACTTTTTCTGTGCATAATACTTAAGTATATAGACAACAAATATGGTACTTAAACACGTCTGGTACACATCTAACACCTTGCCAATCTATGCCAAAAGaaagtttattaaatgtactACAATAAGTGAAGATTTCTGACCTTTCTAAATGCCCAGAATTAATTTCTCAATGAATAGGACGGTATTTTTCactatttgtgaatattttatattgtaaacaaaataggAGGCAAAAAGAAGACTGAATCCTTGGGTGAGGTCCTCTGGTTCCTCAACAAGCAAATGTTGTCCATCCATTATGAGACACATTTCTGCATCCAGCTGGAAGGGATTTCCACAGATTTTAATGACTGGTGTCGCAGCTATAGGACCCTTTGTCAcggttccctagccctgaccctctttcccctcTAGAGGCCACCACTATTTCCCTGCCTTTTCATTATCTCTTCACTGCTCTCATTtctcactctttcaattaacattcctacacGCCCATGTGCACACTTGTTCCTTACCTCTTCTCTCATTGGCCCTGCACTTGCCTTCCCACCTTCTGCatcccttcttaaacccctcactgcttGCACGCAGGGTGAAGTGTCATCAAGCCTTGCTCCCTGTGTGCGCTCGCGGTTGCCCGCTCCCTGTCCTAGTCCTGTGTCTTACTCGACCTCCTTGATCTAGACCTTGCTTAGTCCTTGTGTCTTGTCAGCCTCCTCGACAaacactgcacctgggtcctaactCCCTTGCCCTGCGGTCCTCTCCTGAGACTGTGACACCCttcaataaaacagacaaaatgtcttgctctgtatttaaaaaacaaaatgaatctgtgtgaaaatgtagctttttcatattttaatattcacaaAAGCTTTTACCTATAGTTACATGTTTCAGTGTGGGCTCCAGTCACTCCAGCTGTTATCGCTTTTGGGTATGCAGTGTGTCTCAGGCAGATTAAATAATAGCTAGTTCTATATTCTGACTCAAACCTTCTTTGAAGAACTAtgacttgaaaataaaaatgcatgcatattCTAACTGAAAAGATAAAGAtggtgatgataatgataataataataataataattataataataataataataataaataaaaaaacgtttATCTTGTAGCTCACATAAAGGAGTTGTGTCTCCTCTTTCAACAGATGGGGAAGAAGCAATGCAGCAGACTTGGGATGCACAAATAAACGTATATAAAAGCCATTATTTTTTGGAAAGATTACATGATGGCTTACCAATCATATCAGCCAATCAGAGTTCTGGAACTTCCCTAAGTGTAAATTATTAACTGGCAAAAAGGCTACAAAAGGTGTGTACTTAGCTTGCTTTACTAGCATTATttgggcagtagtgtggagtagtggttaggactctggagcacagggttgtgggttcaatcacAGGTAGGGacgctgctgttgtacccttgagcaaggtgctttaactagattgctccagtaaatgtaaaaaaacgaATGTGATAtcttataacaattgtaagtcaccctggattgctccctttcccgtagcccctgactgtgaccctacatcttgacagcacttagcttttaccgtccaggatgtaggacctcacttactgtacttgcctgtgtaaattgtaaattgtaatttgtaaaatgtattatattttgaattgctatgttttatgtaaattgaatttgtaatgattgatgcctttattgaactgtatttttgcactttgttttgcacttatgttgtaagtcgccttggataagggcgtctgccaagaaataaaataaaataaaatataataataataataataataatattaagggtgtctgctaagaaatcaagtaataatcatataaataactataatattGTGCAGAAAAATATGTTACTTGTTTGGATGTACCTCTTCCCTTTGTCTTGCTGCATCATACAGATCAAGGAGATTCTTGCCCGTCTCTTTCCTTTTGCATTCTTCAATGATTTTGTCCGCAACAATCCCAAACCCAGACTTGAACTTTTTGTCAGTATCGACAATGTGGGATTTTGTAGCTACAGAGAAGAGCTGaatgttaaataatatattttttaataagattatTACTTTCCTACTTgccaattttaattttaaattacacagtaTATTATCATAGTCATTCCTATCAACcctattgtttaaatattactaCTTTAAAAGATAACTAggatatttgtaatgtttgatgcctgtacttaactgtattcttgcacttatgttgtaagtcgccctggataagggcatctgccaaaaaaaaaaaataataataataatatttgttttcccagagaaacaaatgtaatcaaaaggGATATTTTTTGAATCATTAATAATCAAATTcttaaagaattaaaatataagtatcacatttaaattatatcttAGAATAGGTGGAAAACAATATGCAGGATATTGCTCCAGTATTTCAATTGTAGAATGGctattaatacaaatgtcacGTTGATGGCctgttctgttcattttgtCTTGTAGAAAGCTAATGTTTGGTCAACTTTTTTTGCATTCGGCCAGCATCTGTTCTATATGCATCAAACAGTTCCTCTCATCTTCACCATTTATTTCTATCAGGATCTGTAAAGATAGTTACAACgtttattatttgtcattactgagatacaaatgttaaatatatatctgttaaCAGGTCATTGATGATCTGTCATGTATTCCATATGCAAaattttcaatttcataatTGAGCTGATTCAGCGTACACACTTCGTGATGAAGCAGTTGTTTAATTAGCAACTTTAGGACATGGGGCACAACTTCTAAAAAACATGCATGAGGTCGGGAGGAAAAACATGCAGAACTGGAGATGGTGCATACTTCAGTTTAGTGAAGCAGCATTCCTTTGCTACACCATATATTGGCACATTGTCTGGGTTTTCCTTTGCAGCCTGCAGATGATGCAACTAGTTTCATGATGTTCTTGCAATTAAATCCTCTTCTTCAAATTTTGATCCAATTTCTTCTCTTGTTGCCATACAAAACCGGCATATTCTTCcctcattaaatgtatttcttagccTGTGGACTGAAAGATTATCTCCTGAGATGCTTGCAATCGTCCCCAAGAAATGTCTTCCTTCTCCATTACATGACAAAGTCACACCTGATTATTCTAATTTTGCTGCATCTTCAAGTAATGACTTCGCGATGTCTGCATATGTGAAACCTTTCTGCAGTAACTTGTAACGGtagaaagatatatattttgaagatgAGAGCTGTTCTGTTTGTGTATATTGCCAGTTGAAAAATAGACAGCTGTTAGTTTGTGCTTCCCTCTTTTGGAGCCAagttgttatctttcaagtcggaatcaccttatatattccgactgcttctgtgttggttttttgtccacagggctttttcctccacagtagAAGCGCTGGCAGTGGCTGTAAAAtgcgaggcccggctgcccggcctgagccttggtgtgtcgtaagagatctcgcccgcgtgaggtgctcctccgccggcttgtgcccgcactacagcACTACGATGATACAggccaagtaaaaaaaatatatatacgttTTTTTATTAGACTTGCGTCAGTGCTCATGTGTTGGTTCGAGTATCCGCGTTGCCATTTTTGTATCCGATTGATGCGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124299 lncRNA downstream 125392 15753816 ~ 15754026 (-) True G99535
TU124272 lncRNA downstream 246810 15632395 ~ 15632608 (-) True G99516
TU124269 lncRNA downstream 314027 15565126 ~ 15565391 (-) True G99513
TU124223 lncRNA downstream 564965 15314153 ~ 15314453 (-) True G99476
TU124193 lncRNA downstream 626701 15249901 ~ 15252717 (-) True AMCG00015660
TU124372 lncRNA upstream 18930 15902451 ~ 15959831 (-) True G99576
TU124396 lncRNA upstream 103563 15987084 ~ 15990263 (-) True G99594
TU124406 lncRNA upstream 116281 15999802 ~ 16004030 (-) False G99596
TU124405 lncRNA upstream 117662 16001183 ~ 16004030 (-) True G99596
TU124443 lncRNA upstream 176675 16060196 ~ 16068129 (-) True G99614
AMCG00015667 mRNA downstream 65059 15792513 ~ 15814359 (-) True AMCG00015667
AMCG00015666 mRNA downstream 176297 15687642 ~ 15703121 (-) False AMCG00015666
AMCG00015664 mRNA downstream 321642 15555165 ~ 15557776 (-) True AMCG00015664
AMCG00015662 mRNA downstream 540356 15338036 ~ 15339062 (-) True AMCG00015662
AMCG00015660 mRNA downstream 626697 15249977 ~ 15252721 (-) False AMCG00015660
AMCG00015672 mRNA upstream 174281 16057802 ~ 16060001 (-) True AMCG00015672
AMCG00015676 mRNA upstream 368898 16252419 ~ 16272647 (-) True AMCG00015676
AMCG00015677 mRNA upstream 431967 16315488 ~ 16324527 (-) True AMCG00015677
AMCG00015680 mRNA upstream 562451 16445972 ~ 16448187 (-) True AMCG00015680
AMCG00015683 mRNA upstream 577201 16460722 ~ 16463940 (-) True AMCG00015683
TU124288 other downstream 176128 15701078 ~ 15703290 (-) True AMCG00015666
TU124200 other downstream 618934 15259461 ~ 15260484 (-) True G99454
TU124167 other downstream 690024 15102617 ~ 15189394 (-) True G99426
TU124175 other downstream 707746 15170615 ~ 15171672 (-) False AMCG00015659
TU124002 other downstream 1184048 14690870 ~ 14695370 (-) True AMCG00015645
TU124430 other upstream 134062 16017583 ~ 16102456 (-) True G99605
TU124478 other upstream 338244 16221765 ~ 16222155 (-) True G99646
TU124562 other upstream 645856 16529377 ~ 16535468 (-) True AMCG00015691
TU124837 other upstream 1954059 17837580 ~ 17837942 (-) True G99939
TU124970 other upstream 2744822 18628343 ~ 18630665 (-) False AMCG00015723

Expression Profile