RNA id: TU126211


Basic Information

Item Value
RNA id TU126211
length 464
RNA type TUCP
GC content 0.44
exon number 2
gene id G101067
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 24992953 ~ 25000890 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGGATCACCAGgaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgatttaagcaattttgagcgtggcatggttgttggtgccagacgggccggtctgagtatttcacaatctgctcaattactgggattttcacgcacaaccatttctagggtttacaaagaatggcgtgaaaagggaaaaacatccagtatgcggcagtcctgtgggcgaaaatgccttgttgatgctagaggtcagaggagaatgggccgactgattcaagctgatagaagagcaattttgactgaaataagcactcgttacaaccgaggtatgcagcaaagcatttgtgaagccacaacacGTACAACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126186 lncRNA downstream 248597 24744082 ~ 24744356 (-) True G101045
TU126181 lncRNA downstream 363170 24629564 ~ 24629783 (-) True G101040
TU126177 lncRNA downstream 373219 24619120 ~ 24619734 (-) True G101036
TU126163 lncRNA downstream 405954 24586485 ~ 24586999 (-) True G101023
TU126059 lncRNA downstream 677534 24314177 ~ 24315419 (-) True G100933
TU126255 lncRNA upstream 399092 25399982 ~ 25402497 (-) True G101103
TU126272 lncRNA upstream 573513 25574403 ~ 25574921 (-) True G101115
TU126360 lncRNA upstream 994953 25995843 ~ 26045342 (-) True G101181
TU126436 lncRNA upstream 1250233 26251123 ~ 26253246 (-) True G101242
TU126443 lncRNA upstream 1263186 26264076 ~ 26264315 (-) True G101249
AMCG00015844 mRNA downstream 374783 24605666 ~ 24618170 (-) True AMCG00015844
AMCG00015843 mRNA downstream 392689 24594299 ~ 24600264 (-) True AMCG00015843
AMCG00015841 mRNA downstream 438998 24543597 ~ 24553955 (-) True AMCG00015841
AMCG00015840 mRNA downstream 532675 24454436 ~ 24460278 (-) True AMCG00015840
AMCG00015839 mRNA downstream 612484 24354563 ~ 24380469 (-) True AMCG00015839
AMCG00015862 mRNA upstream 404501 25405391 ~ 25774014 (-) True AMCG00015862
AMCG00015856 mRNA upstream 793649 25794539 ~ 25812098 (-) True AMCG00015856
AMCG00015858 mRNA upstream 816345 25817235 ~ 25826561 (-) True AMCG00015858
AMCG00015860 mRNA upstream 846146 25847036 ~ 25980178 (-) True AMCG00015860
AMCG00015855 mRNA upstream 1041254 26042144 ~ 26045985 (-) True AMCG00015855
TU125431 other downstream 4713309 20269829 ~ 20279644 (-) False AMCG00015761
TU125314 other downstream 5016884 19974956 ~ 19976069 (-) False AMCG00015752
TU124970 other downstream 6362288 18628343 ~ 18630665 (-) False AMCG00015723
TU124837 other downstream 7155011 17837580 ~ 17837942 (-) True G99939
TU124562 other downstream 8457485 16529377 ~ 16535468 (-) True AMCG00015691
TU126708 other upstream 3160947 28161837 ~ 28257732 (-) True G101456
TU126809 other upstream 4103339 29104229 ~ 29106160 (-) True G101540
TU127089 other upstream 5165136 30166026 ~ 30168248 (-) True AMCG00015936
TU127207 other upstream 5640304 30641194 ~ 30724429 (-) True G101853
TU127206 other upstream 5718931 30719821 ~ 30724429 (-) False G101853

Expression Profile