RNA id: TU126708


Basic Information

Item Value
RNA id TU126708
length 1910
RNA type TUCP
GC content 0.43
exon number 2
gene id G101456
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 28161837 ~ 28257732 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ataatatatacaccgatcagccataacattatgaccactgacaggtgaagtgaataacactgataatctcgttatcatggcacctgtcagtgggtgggatatattaggcagcaagtgaacattttgtcctcaaagttgatgtgttagaagcaggaaaaatgggcaagagtaaggatctgagcgactttgacaagggccaaattgtgattgctagacgactgggtcagaacatctccacaactgcagctcttgtgggctgttcccggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcggagaaccagcgacagggtcatgggcggccaaggctcactgatgcatgtggggagcgaaggctggcccgtgtggtccaatccaagagacgagctactgtagctcaaattgctgaaatagtgaatgctggttctgacagaaaggtgtcatgaacacatgaacacacagtgcatcgcagtttgttgcgtatggggctgcgtagccgcagaccagtcagggtgcccatgctgacccctgtccactgctgaaagcgcctacaatgggcacgtgaacatcagaactggaccacggagcaatggaagaaggtggcctggtctgatgaatcacaagttcaaggtgttgacttggcctccaaattccccagatctcaatccaatcgaacatctgtgggatgtgctggacaaacaagtccgatccatggaggccccacctcgcaacttacaggacttaaaggatctgctgctaacgtcttggtgccagataccacagcacaccttcagaggtctagtggagtccatgccacgacgggtcagggctgttttggtggcaaaaggggcaCCTACACAATAAtatgcaggtggtcataatgttatggctgatcggtgtatttaacataaaataactggataataataattaatagtaatacactcataataaaaatactactcTTTCAAGAATTACAAGTCATTCCAAGAGACTATTTCTAATGCATGATGGTCTTTGCaatatcaaatgtttttgtatgtgtttatatctaTCCTTCATCTTGATGTGAGACAGTTTATAGTTTTCACTCTGCAGTGAtaacatctttaatttaatgatagcagctgcaatacatttaatctgaTCAATTCTTCCTGTAACCAACAAGGGTGTGCAATATGGTATATGGGtgatacacacaaacatgcttCGCCTTTCTTCTTCCCTGCAAAACGATCTTACCTACGTGCAACACAATCATAAATCCTGCTATTATGCTATTTAGCCACTGGGTGGAGCGTTCAGACACACTGTGCGCcatattttctgaaattgaaACACACTGTGTGGCATAACATTAAAAGGCATTCAAATAGGGAACACTATTAATTTAACTTtccaaaatatgtttacatttccaGAGAATTACCCGCGTTTACCTGAGAAacaagaacagcagcagcaaaaacacacagattgcACGGACACAAGGCACTTACTGTACAAACCATGCTTTATATTACAAGACCATTTGGCCAATTAACAGAATTAAGTGTCACCCACGACAAAAGGGTCATTTCGCCAAACAACTGTCCTCTCTTGACTGATTGATTGTCGTTGCACACTCTCATTACTCATGCGTTGCAACTTCAACCTTTCCTCTGACCAGGGGCTCCCATAAATTTCAATCTCTCGCAGTCTTTATGACTGGGCAGAAGTAATCCCTTTGTTCCAATCAGGGGCTAAAAGGCCTGTTGTCCTATAGCTCTAACATCCCATTTAATTGCGCTATCGATCTGACTGCCACACTTGGGTCAATTGAGTTAATGTTATGGTAATTGTGCATAATTTTAAGACCTGCCCTCTtcccctaaaaataaataaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126692 lncRNA downstream 114350 28041563 ~ 28047487 (-) False AMCG00015891
TU126655 lncRNA downstream 164160 27987108 ~ 27997677 (-) False AMCG00015892
TU126622 lncRNA downstream 492082 27669432 ~ 27669755 (-) True G101388
TU126594 lncRNA downstream 1391569 26768207 ~ 26770268 (-) True G101369
TU126539 lncRNA downstream 1586627 26574385 ~ 26575210 (-) True G101318
TU126852 lncRNA upstream 950565 29208297 ~ 29269160 (-) True G101571
TU126851 lncRNA upstream 958429 29216161 ~ 29219485 (-) False G101571
TU126970 lncRNA upstream 1323117 29580849 ~ 29638632 (-) True G101660
TU127049 lncRNA upstream 1717661 29975393 ~ 29975724 (-) True G101728
TU127171 lncRNA upstream 2078355 30336087 ~ 30339728 (-) False G101828
AMCG00015891 mRNA downstream 91961 28042184 ~ 28069876 (-) True AMCG00015891
AMCG00015892 mRNA downstream 164161 27986755 ~ 27997676 (-) True AMCG00015892
AMCG00015888 mRNA downstream 313043 27841123 ~ 27848794 (-) True AMCG00015888
AMCG00015885 mRNA downstream 1193476 26952466 ~ 26968361 (-) True AMCG00015885
AMCG00015884 mRNA downstream 1308653 26815694 ~ 26853184 (-) True AMCG00015884
AMCG00015899 mRNA upstream 162303 28420035 ~ 28420653 (-) True AMCG00015899
AMCG00015898 mRNA upstream 163272 28421004 ~ 28430491 (-) True AMCG00015898
AMCG00015904 mRNA upstream 333039 28590771 ~ 28608450 (-) True AMCG00015904
AMCG00015903 mRNA upstream 360844 28618576 ~ 28632799 (-) True AMCG00015903
AMCG00015905 mRNA upstream 388599 28646331 ~ 28655271 (-) True AMCG00015905
TU126211 other downstream 3160947 24992953 ~ 25000890 (-) True G101067
TU125431 other downstream 7882193 20269829 ~ 20279644 (-) False AMCG00015761
TU125314 other downstream 8185768 19974956 ~ 19976069 (-) False AMCG00015752
TU124970 other downstream 9531172 18628343 ~ 18630665 (-) False AMCG00015723
TU124837 other downstream 10323895 17837580 ~ 17837942 (-) True G99939
TU126809 other upstream 846497 29104229 ~ 29106160 (-) True G101540
TU127089 other upstream 1908294 30166026 ~ 30168248 (-) True AMCG00015936
TU127207 other upstream 2383462 30641194 ~ 30724429 (-) True G101853
TU127206 other upstream 2462089 30719821 ~ 30724429 (-) False G101853
TU127273 other upstream 2799035 31056767 ~ 31085062 (-) False AMCG00015950

Expression Profile