RNA id: AMCG00016071


Basic Information

Item Value
RNA id AMCG00016071
length 1395
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00016071
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4626584 ~ 4635627 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCGGTTCTATCTAGTGGAGCCTGTGATCGGCCTCTTTGCTTTCGCCAGTTTTATGACATACCCCCTGCTACAGCAGTACATCTACCGGCGGATGTGGGAACAGGTGACCAACTCCACTTACCCCGACTCCCTCAACTCCTCTCACTGCACAGGCAACGACACCGGCCTGACCAAACGCCACGACGATGTACAGAAGAAGACCTCCCTGTTCTTTCTGTACAACGAGTTGTGCTTCATGTTCCCTGGCCTGGCCGTCTCCTTGTTCCTAGTGTCATACAGTGACCAGCGCGGCCGCAAGATAGCCATTATCATCCCTCTCATTGGGGATGTCGTATTCACTTTCACCTACTTCGTGGTGTGCTCCTTCTCTTTGAGCCTGAACTACCTACTCGTTGCTTCCTTCCTGTCAGGGATCCTGGGAGGGCCCACATGCCTCGTAGGGGGTTGTTTCGCGTACGTGGCCGACCTCTGCgacaacagcagcacaaagaCGGTCCGTATGGCCGTGCTGGATATGGTGGTGGGACTGTTGTCAGGCCTTGCGTCTCTGTCCACTGGGTTTTTCATCAGGGCAGCAGGATTTAAATGGCCCTTCCTCACAGCTGCTCTGCTCCATGGCCTTAACATCGTCTACGTGGTCTTCTTCCTGGCAGAGACGGTTCAAAATCCTGCCCCCGCCAGCTTCACCCTGAGAAGCCGCTTCAATGGGGTCTACCTGCTCTTTGCTGCTGCTCCAAGGAAGAGGACCACACTCCTCATCCTCATGCTGCTGGCATTCACTTTCTACAAGTTTGCCAAGGTGGGCGGGATGTTCATGTTTATCCTGTATGAGCTCAACGCCCCCCTGTGTTGGGACGAACTCCTGGTGGGCTACGGCTCAGCCCTCTCCACCCTTATCTTCCTGACAAGTTTTGCAGGGGTGTCCCTGTTGTCCCACTGCCTGCATGATGTCCACATCGTGCTGATCGGCCTGCTCTCTGTGATGGCAGGCCTGGTGATGACCGCCTTCGCCAAGACCACTCTCCTCATGTTTCTTGtgagAGTGCCCTTACTTTTGGCTATCATGCCTGCTCCAGTGCTCCGCTCCATGATGTCCAAGATAGTTTCAAAATCTGAGCAGGGGGCAGTGTTTGCATGTGTTGCCTTCCTGGAGATGCTGAGCACTGTGGTGTCCTTCGCAGCATTCAGCAGCATCTACGCCGCCACTGTGTCCTGGTTCTCTGGTTTCAGCTTCATCCTGGCTTCAGGCTTGACCCTGATCCCCCTAACTCTGATGGGctgtgtgttttgtctggGTCTGGAGGGAACTAATGAAACCCAGTGTCTCACCACTGAAGACGAGGATGTCAATGAAGGCAAAATCAAGCTGCCTGAATGGGACCACAGATGA

Function

GO: NA

KEGG:

id description
K20840 SLC46A3; MFS transporter, PCFT/HCP family, solute carrier family 46, member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13398 lncRNA downstream 3368 4622731 ~ 4623216 (-) True G10812
TU13392 lncRNA downstream 34507 4591820 ~ 4592077 (-) True G10806
TU13391 lncRNA downstream 38709 4586723 ~ 4587875 (-) True G10805
TU13313 lncRNA downstream 252863 4371465 ~ 4373721 (-) True G10740
TU13308 lncRNA downstream 271288 4354853 ~ 4355296 (-) True G10735
TU13410 lncRNA upstream 2823 4638450 ~ 4638659 (-) True G10821
TU13412 lncRNA upstream 4162 4639789 ~ 4641030 (-) True G10823
TU13464 lncRNA upstream 161200 4796827 ~ 4860892 (-) True G10867
TU13465 lncRNA upstream 223431 4859058 ~ 4875011 (-) False G10867
TU13478 lncRNA upstream 268229 4903856 ~ 4907602 (-) True AMCG00016074
AMCG00016072 mRNA downstream 23311 4600941 ~ 4603273 (-) True AMCG00016072
AMCG00016073 mRNA downstream 44288 4576544 ~ 4582296 (-) True AMCG00016073
AMCG00016065 mRNA downstream 94321 4518570 ~ 4532263 (-) True AMCG00016065
AMCG00016062 mRNA downstream 109098 4507463 ~ 4517486 (-) True AMCG00016062
AMCG00016064 mRNA downstream 135919 4476339 ~ 4490665 (-) True AMCG00016064
AMCG00016068 mRNA upstream 7713 4643340 ~ 4664628 (-) True AMCG00016068
AMCG00016070 mRNA upstream 109642 4745269 ~ 4763349 (-) True AMCG00016070
AMCG00016069 mRNA upstream 225858 4861485 ~ 4887805 (-) True AMCG00016069
AMCG00016074 mRNA upstream 269071 4904698 ~ 4929900 (-) False AMCG00016074
AMCG00016075 mRNA upstream 297197 4932824 ~ 5269754 (-) True AMCG00016075
TU13237 other downstream 706160 3907759 ~ 3920424 (-) False AMCG00016049
TU13149 other downstream 1087391 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 1591401 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 1915899 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 3555919 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 6211207 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 6211304 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 7687534 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 8226472 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile