RNA id: AMCG00016239


Basic Information

Item Value
RNA id AMCG00016239
length 3506
RNA type mRNA
GC content 0.55
exon number 26
gene id AMCG00016239
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 13212058 ~ 13247016 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGATGGAATagattgacttttttttccccctgcctTTCCCATGGCTCCGGTTAGTGCACTGATAAACAGGGGGACATCTTAACTCTTTTATTTCGTTTTATTGCCAccttcttttttttggttttgttttattttggttttaattcgGCCATGACCGTGGAGCAGAATGTCCTCCAGCAGCACTCCCAGAAGCACCAGCAAACACTACTGAACCAGCTCAGAGAGGTTACCGGAACCACAGATGTACAGCTCTTACAGCAGGCTCTGCAGGTCAGTAATGGGGATCTTGCAGAAGCAGTTGCCTTTCTGACAGAAAAAAATGCCAAGGTCCCCCAGCAGGATGAAGCCACTTACTACCAAACTGCACAGATTGGAAATGACAGATACATCAGTGTGGGCAGCCAGGCTGACACAAATGTGATCGATCTGACTGGAGATGACAAGGATGACCTTCAGAGAGCCATCGCTCTGAGCCTGGAGGAGTCTAACAGGGCCTTCAGGGAGACGGGCATCACAGACGAGGAGCAGGCCATCAGCAGAGTGCTAGAGGCAAGCATAGCGGAAAACAAGGCCAGCTTGAAGCGAACGCACACAGAGGCATGGAGTGATTCGCCAAACCCCCACGATAGGAAGAGGCAGGAGAACTGCCCGGTGGGGCTGAAGAATGTTGGGAACACCTGCTGGTTCAGTGCGGTCATTCAGTCTCTGTTCAACCTGCTGGAGTTTCAGCGCCTGGTCCTGCACTACGCCCCCCCGGCCTGTGCACAGGACTTGCCTCGCAATCAGAAAGAGCACAGTAATTTACCCTTCATGCGGGAACTGAGGCATCTCTTCTCGCTTATGGTGGGATCCAAACGAAAATACGTGGACCCCTCCCGGGCCGTGGAAATCCTGAAGGATGCCTTCAAGTCTACTGACTCGCAACAGCAGGATGTGAGTGAGTTTACACACAAGCTGTTGGACTGGCTGGAAGATGCCTTTCAGATGAAAGCAGAGGAGGAGAGagaaggagagaagccAAAGAACCCAATGGTGGAGCTTTTCTATGGCCGCTTCCAGGCAGTGGGTGTCCTTGAAGGGAAGAAGTTTGAGAACACAGAGATGTTTGGTCAGTACCCTCTGCAGGTCAATGGCTTCAAAGATCTGCACGAGTGCCTGGAGGCAGCCATGATCGAGGGAGAGATCGAGTCCTTGCATTCAGAGAACTCTGCCAAATCCGGTCAGGAGCACTGGTTTACTGAGCTTCCACCCGTCTTGACATTTGAACTGTCCAGATTTGAGTTCAATCAAGCTCTGGGAAGGCCTGAGAAGATACACAACAAACTGGAGTTTCCCTCAATGCTCTATATGGATAGgTACATGGACAAGAACAGAGATATAACCAGAATCAAACGTGAAGAAATCCGTAGGCTAAAAGAACATCTGACAGTGTTACAGCAGCGGTTGGAGAGGTATCTGAGTTACGGCTCTGGTCCCAAGCGCTTTCCTCTCGCTGATGTCCTGCAGTATGCCATGGAGTTCGCCTCCAGCAAGCCTGTCTGTACCTCGCCTGTGGAAGACATTGACACTGCAGCGCCCCCTGGTGGCACGACAGCGTCACAGCCAGCACCAAGGCATGCATTCAGCGCAGAGCAAGGCCCATCCTGTTCCCCTGAGTCGCCCACGACTCCTCCCTCCCAGCAGAGGGCGCCCATTCACAAGCCCTTTACCCAGTCCCGCATCCCCCCCGACCTGCCCATGCACCCTGCACCACGCCACATCACTGAGGAAGAGCTGCGGGTGCTGGAGGGCTGTCTGCACCGCTGGAGGAGCGAGGTGGAGAACGACACCAGGGACCTGCAGGGCAGCATCACGAGGTTACACCGCACGATCGAGCTGATGTACTCGGACAAGTCTATGATGCAAGTTCCTTACCGGTTACACGCGGTCCTGGTGCACGAGGGCCAGGCCAACGCAGGACACTACTGGGCCTACATCTACAACCCTCACCACCGGCGGTGGATGAAGTACAACGACATCTCCGTCACTAAGTCCTCGTGGGAAGAGCTGGTGCGGGACTCTTTTGGGGGCTACAGGAACGCCAGTGCCTACTGCCTAATGTACATCAATGACAAGAAGCCCTTTCTGATCGAAGAGGAGTTTGACAAGGAGACGGGCCAGATGCTGAGTGGATTTGACAAGCTTCCCCCGGATTTGAAGGAATACGTGAAAGAAGACAATCAGTTGTTTGAGAAGGAGATGGAGGAGTGGGATGCCCAGCAGATTCGCAAAGCACAGCAGGACAAGCTGGCGGCGAtggcggcggcggcagcagcggcatcggcagcagcagcagctgtaaCGCAACAGGCAGCGTCGCAGGAGCCCAGTCCGCCAGAACCCACAGCCCTTCCTCAGGACCCCGAGTACATGGAGCAGCCCTCGCCCACCGATGATTCGAAGCACTTGCAGGAGGACACGGAGAGAGCCATCTCGAGGGCTGCAGCCGAGCACGAGGGGATGAGCACCGAGGCCCTGTTGAGCGCAccTGCTAGCGAGGcccccaccccgccccctcCCTCGCAGCGTGTGATAGAGGTGGCCATCCCTCACGTGGGGACCTTCGTCATCGAGTCGGAGGAGGGGGGGTACGATGACGAGGCAATGCTCACCCCAACCATGCAGGGTATCATAATGGCCATTGGCAAAGCCAGGAGTGTGTATGACAGGTGTGGTCCTGAAGCTGCCTTCTTCAAGGCTATCAAGCTGGAGTATGCGCGGCTGTTGCGGTTCGCTCAGGAGGACACGGCCCCCGAGAATGACTACCGGCTGCAGCATATCATCGTGTACTTCATCCAGAACCAGGCCCCCAAGAAGATCATGGAGCGCACCCTGCTCAAGCAGTTTGCAGACCGCAACTTGGGCTTCGATGAGCGATGTAAAAACATCATGAAAGTTGCACGTGCAAAACTAGAGCTTATAAAGCCTGATGAAGTAAATATGGAAGAATATGAGATGTGGCACCAAGACTACCGCAACTTTCGGGAAACGACTATTTATCTCATGATTGGCCTGGAGCTGTTTCAGAAGAGGAGCTATGTGGAAGCCTTGATGTACCTGATCTACTCCTATCAGTACAACAAGGAGCTGTTATCCAAAGGTCCCTACCGCGGGCATGACGATGAGCTGATCGCACACTACAGGAGAGAGTGTCTTCTGAAGCTGAACGAGCACGCGGCTGCGCTGTTCGAGTCCGGGGACGACCAGGAGGTGATCAGCGGCCTGAGCATCATGAACGAGCTGGTGGTGCCCTGCATCCCACTGCTGCTGGTGgacgagatggaggagaagGACATGGTGGCCGAGAAGCTCACCGACTTCCTCCCCAAGCTGCTGGACTGCTCCACCGAGATCAGGAGCTTCCGGGAGCCCCCGAAGCTGCCCTCCTACTCCACCCTCGAACTGTGCGAGCGCTTCAGCCGCGCCATGGCCTCCCTGAGCCGGATACCTGCCGACGGGAGATGA

Function

GO: NA

KEGG:

id description
K11849 USP25; ubiquitin carboxyl-terminal hydrolase 25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15082 lncRNA upstream 111475 13042242 ~ 13100583 (+) True G12214
TU15144 lncRNA downstream 24568 13271584 ~ 13377103 (+) True AMCG00016241
TU15146 lncRNA downstream 105192 13352208 ~ 13389636 (+) False AMCG00016241
TU15170 lncRNA downstream 226472 13473488 ~ 13473785 (+) True G12289
TU15214 lncRNA downstream 299383 13546399 ~ 13546598 (+) True G12330
TU15215 lncRNA downstream 304578 13551594 ~ 13551858 (+) True G12331
AMCG00016240 mRNA upstream 23665 13185034 ~ 13188393 (+) True AMCG00016240
AMCG00016231 mRNA upstream 148550 13037182 ~ 13063508 (+) True AMCG00016231
AMCG00016237 mRNA upstream 190857 13020983 ~ 13021201 (+) True AMCG00016237
AMCG00016230 mRNA upstream 238511 12960048 ~ 12973547 (+) True AMCG00016230
AMCG00016229 mRNA upstream 321287 12885626 ~ 12890771 (+) True AMCG00016229
AMCG00016241 mRNA downstream 140946 13387962 ~ 13389617 (+) False AMCG00016241
AMCG00016242 mRNA downstream 198022 13445038 ~ 13455916 (+) True AMCG00016242
AMCG00016249 mRNA downstream 336028 13583044 ~ 13588973 (+) True AMCG00016249
AMCG00016250 mRNA downstream 350818 13597834 ~ 13617644 (+) True AMCG00016250
AMCG00016256 mRNA downstream 429978 13676994 ~ 13705883 (+) True AMCG00016256
TU14996 other upstream 430194 12778224 ~ 12781864 (+) False AMCG00016221
TU14724 other upstream 1340323 11868825 ~ 11871735 (+) True G11921
TU14432 other upstream 3612902 9598815 ~ 9599156 (+) True G11660
TU14381 other upstream 3620409 9559464 ~ 9591649 (+) True AMCG00016159
TU14288 other upstream 3985813 9223412 ~ 9226245 (+) True G11545
TU15233 other downstream 374863 13621879 ~ 13627711 (+) True G12348
TU15235 other downstream 384269 13631285 ~ 13631797 (+) True G12349
TU15237 other downstream 388426 13635442 ~ 13637001 (+) True G12351
TU15538 other downstream 1190755 14437771 ~ 14438606 (+) True G12587
TU15937 other downstream 3237339 16484355 ~ 16486003 (+) True AMCG00016329

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005465 True 4049 mRNA 0.51 24 NC_007121.7 38171041 ~ 38243579 (-)
grasscarp (Ctenopharyngodon idella) CI01000304_18419836_18444486.mRNA True 4491 mRNA 0.50 27 CI01000304 18419074 ~ 18444486 (-)
mexican tetra (Astyanax mexicanus) TU235953 True 1610 TUCP 0.54 13 NC_035916.1 7904595 ~ 7925440 (+)