RNA id: AMCG00016637


Basic Information

Item Value
RNA id AMCG00016637
length 2881
RNA type mRNA
GC content 0.53
exon number 13
gene id AMCG00016637
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26559807 ~ 26572357 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCGGAACAAAGGAAGTGTGCAGAGGGAACAAAGGGAGTCGGGGGAACCAATGACCGGAATAGCCTGATATCTTCCACCCAACAGCCAAGATGTCAAAAAGGCCATCCTATGCCCCTCCCCCTGCCCCAGTCCCCACCACACAAATGCCCAACACCCCAGGGTTTGTGGGATACAACCCATACAGCCATCTGGCCTACAACAACTACAGACTGGGAGGAAACCCAGGCAGCAACAGCCGCGCCACGTGGCATGTGGAGCCGAGCTGCTGTGGCCCCGTGCATGAGGCAGCGAGTCGATGGCTGACGCTGCGTGGCTTGGCATGGCTGTTGGCAGCATTGGCTCTGAAAGGGGGGAATGAGCGgctagctAATTCATCGGGGATCACCATTCCCAAGCCACCGAAGCCCCCAGATAAGCCACTGATGCCCTACATGCGATACAGCAGAAAGGTTTGGGACCAAGTCAAAGCCTCCAATCCGGACCTGAAGCTATGGGAAATTGGGAAGATCATCGGTGGGATGTGGAGGGACCTCACTGATGAGGAGAAGCAGGAATATCTGAACGAATACGAGGCTGAGAAGATTGAATATAATGAGTCCATGAAGGCCTACCACAACTCCCCGGCCTACCTGGCGTACATCAACGCAAAGAGCCGCGCAGAGGCGGCGCTGGAGGAGGAGAGCCGGCAGCGGCAGTCTCGCATGGAGAAGGGGGAGCCCTACATGAGCATCCAGCCCGCCGAGGATCCCGACGCTCAGAGCTGCGGTCCGACTGAGCTCctggtgtttgtgtctttccCACATGAGCTGCAGCAGGACTACGATGATGGCTTCTCCATGAAGCACACGGCAGCGGCGCGATTCCAGAGGAACCACCGGCTGATCAGCGAGATTCTGAGCGAGAGCGTGGTCCCCGACGTTCGCTCCGTCGTCACCACGGCCCGCATGCAGGTGCTGAAGAGGCAGGTGCAGTCGCTCATGGTGCACCAGAGGAAGCTGGAGGCCGAGCTGCTGCAGATTGAGGATCGCCACCAGGACAAGAAGAGGAAATTCCTGGAGACAACAGAGTCCTTCAACTGCGAGCTCAAACGGCTGTGCAGCCTGAAGGTGGAGGTGGACATGGAGAAGATAGCGGCGGAGATTGCGGCTGCGGAGGAGGCTGCGCGGCGGCGGGCGGAGGAGCGGGAGCGCGAGGCGGCCGAGCAGGCGGAGAGAGCAGCCGCTGCCGCcgccctggaggaggagaagcgTGAAGCCGCCGCCACAGCCAAGCCCCCCGAGGAAGAGCCGGAGGAGGGGGCcaaaaaggaggaggaagaggaagaggaggaggccGAGAGCACCTCCATGGAGACAGGTCAGCAGGCAGCGGAGGAGCCCAGGGCAGAGGAGGTGTTGGAGGGGCAGCAGCCTAGCGAGGAGGGGGCGTCCACCACGGAGGACAAGGAAAGCGTCCCGGAGGGCGGCGACAGCGTGATGGAGGAGGGGACCAGCGACAGCAACACCGGCTCCGAGAGCAACAGCGCCCCCCCCGAGGAGCCACCCCCGGAGCCTGCACCCGAGGAAGCGCCCAGCGAAAAGAGAGAGTGACCGAGCCCAGCGAGGGCTGTGCGTCGTTGTGCTGCGTTGTGCGCGAGGTTCTCCCtggctgtttgtgtttttttttggtttttttgtgttttccacaTTGCTGTTTTTGGGGCATTTCTGGACAGTTTCCAAAAGAAAAAGGCGCTCATCGCATTTAAACTGCTGGGCCATGCAAAGGGGAGCAGAAGCCGGTTATAGGAGCGGGTGGCAGGGGAGTGTTCCCACCCCCTTGGTACATACTGACAGATGTAGGCAGCTGTGGTTAaaccttacatttttttcataggTCGGCTCTATATcctttttaaaccacaaaacCAATGTCCTCAACCAACCAGAtagtgtatattattttttttttcttcccccaacaGAGTTTACTAGGGCGCATCTCTGGCTTCTTAACACAGTCAGTGGAATTAGTGAACACATGACGTTCGCATTAGGAGCGTCTCGGACATCAGGCTGTAGAGAAGGCAGGTGAATTTTGAAAATCGATTTtaatcacttttgttttctattatcaAAACCCATTTGTAcacccaattaaataaaattggaaaatgagaaacaaaacttCGTCCGAGTTTCTGAATGAGTGGTGGCAGAGGAGTGAGGCGCATAAATCAATagctgtttaaaaagaaaaaactaaagaaaagtattttgggGACGAGTCACAGTTGTCATCCTGATGTGCTTTCAATCCTACTTCTTCCTGTAGTCATACTTGAAGGCGAAGGTTTACTGGCTGAACCAAAAGAGCAAAGCTGAGTTGGGTCATTCGCATGGCGTCGTTGCAGCCAGCCGCTGGACATGACCTTTGGGGGCAGTGCTGCTGGTGGTCTGCACTCCTCGCATGAGCGTGGGTATGTTCACAGCCCTGTGCATGTGCTCTGTAGCGCGGCAATTCTGAGGCACAACCTGTTTGGTTATAAATACCTTGCTGTGCAATCGCTCACTGATCTGAAAGGATGTGGGTAAGATAAAGGAATAATTGTTTGGCTTGATAGGTACTTAGTGAGAtgggtttcctgtttttaacatgcattcatcTCCCATTCTCCGCCCCccccattaaaaataaaatctgtaccTCTAGATTCTAgagaaattgcattttgaatggCTGGCTGCTGTtattactatacatttttttttacttattacaTGTTGGCTGAATTTGAAGATGGCACCCCAGGcaaaactgatttaatattcacagtttgattttatgtatttattccccaccccccctttacatgtattttttgtctCTGTAAATTTAAT

Function

GO: NA

KEGG:

id description
K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E, member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18364 lncRNA upstream 11595 26527319 ~ 26548212 (+) True AMCG00016638
TU18352 lncRNA upstream 60565 26495422 ~ 26499242 (+) True AMCG00016640
TU18354 lncRNA upstream 114045 26442152 ~ 26445762 (+) True G14781
TU18340 lncRNA upstream 161880 26397649 ~ 26397927 (+) True G14768
TU18322 lncRNA upstream 177387 26380051 ~ 26382420 (+) True G14755
TU18375 lncRNA downstream 17249 26589606 ~ 26596857 (+) True G14791
TU18377 lncRNA downstream 17249 26589606 ~ 26657318 (+) False G14791
TU18381 lncRNA downstream 54350 26626707 ~ 26633192 (+) True G14793
TU18388 lncRNA downstream 132640 26704997 ~ 26705204 (+) True G14800
TU18390 lncRNA downstream 139874 26712231 ~ 26713129 (+) True G14802
AMCG00016638 mRNA upstream 11668 26529550 ~ 26548139 (+) False AMCG00016638
AMCG00016639 mRNA upstream 38200 26517843 ~ 26521607 (+) True AMCG00016639
AMCG00016641 mRNA upstream 45520 26509041 ~ 26514287 (+) True AMCG00016641
AMCG00016640 mRNA upstream 62602 26489938 ~ 26497205 (+) False AMCG00016640
AMCG00016632 mRNA upstream 91805 26462323 ~ 26468002 (+) True AMCG00016632
AMCG00016646 mRNA downstream 11097 26583454 ~ 26583666 (+) True AMCG00016646
AMCG00016635 mRNA downstream 27736 26600093 ~ 26611394 (+) True AMCG00016635
AMCG00016636 mRNA downstream 93088 26665445 ~ 26667680 (+) True AMCG00016636
AMCG00016647 mRNA downstream 111285 26683642 ~ 26700201 (+) True AMCG00016647
AMCG00016650 mRNA downstream 285361 26857718 ~ 26869181 (+) True AMCG00016650
TU18348 other upstream 127451 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other upstream 130480 26428723 ~ 26429327 (+) False AMCG00016633
TU18257 other upstream 270585 26285863 ~ 26289222 (+) False AMCG00016625
TU18062 other upstream 609631 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other upstream 609631 25940528 ~ 25950176 (+) False AMCG00016607
TU18379 other downstream 33169 26605526 ~ 26657425 (+) False AMCG00016635
TU18699 other downstream 973637 27545994 ~ 27547609 (+) False AMCG00016683
TU18716 other downstream 1016122 27588479 ~ 27599592 (+) False AMCG00016691
TU18717 other downstream 1016122 27588479 ~ 27598648 (+) False AMCG00016691
TU18724 other downstream 1040748 27613105 ~ 27619919 (+) False AMCG00016690

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050334 False 2072 mRNA 0.50 11 NC_007114.7 34985895 ~ 34994988 (+)
grasscarp (Ctenopharyngodon idella) CI01000046_05837676_05841480.mRNA True 1566 mRNA 0.53 8 CI01000046 5837676 ~ 5841825 (+)