RNA id: TU18375


Basic Information

Item Value
RNA id TU18375
length 2981
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G14791
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26589606 ~ 26657318 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGTCCCGCTCTCCCACTCTGTCTTGGTGTCCTTATCCCGGTCCTGGCTCTGATGCTCCCCACTGTGGTGCTTCTGGACGATGCGCATCCCTCCCGCCTTCACTGCAGCCGGCCAAGGaggacagagggggagagacgAACACAAAGCACAGCCAGAAGAGCATTAGGAGGGACATCAGGCCCAGACCCATCACTGCAGCAGGTATGTGTGGGCTCAGGGCTGGCATGCTGCTTTCTCTCCACTGCCTGaccacaaatgtttattttatattattatttgatgtatCTGAACATTGATTTACTTGCTACCCTGTATGCTTCACTGGCTGTTCTGTAAGCTGGCAGTTTTCCAGCCCTGTTATGGCTGCACTACCCCCGGATAAAGATATAAAAACAGTGATGAATCCACACGTGGCATCACTGGATCTAGGCACACATTTGGCAATCTTAAAAAGTATACCATTACTATGAGCTTGAGCAGATAAGAAACTATTTTGTGTAGTTGGCAAGGGGAGGCACCCATAACACCTACCCCTCCCATGCCTTCAGATTTTCCCTGCTGTGGTTCTTCCCCTGCAGAGTTTTCACCGCTAGCAAGAAACATTTTGAGTTGAAGACCAGACCACAAACCATTCTTGGAGTGATGGCAGGTCAGGACTGTCATTTTAAGATTTCCAATTCACAGTGTTAAACCACTGCAGTCTCCAATTCATTGtaatcaagttaaaaaaaaaatacaaatcaaaaccaataactacaacaacaaccatCAAAACTATCATCTCTGGTTCAGacaaaaaacaactacatttaGATTTGTCATTAAATCATGATACATCCAAATCTTCAATTCGTACAGGTATAACTTTATTAACctataataaatacaccaaaTCTTTACTCTGAATGCTCATACTGCAGTGCCAAACTATGAGACAGGACACTATACTCCACTGTGCTATATCAACAGACCATCTACCCCATTTTAAGCCCTGTCAGTGTTGCGATTTGTTTGggtccattaaaataatattagtgatagtcttaataataataaataataaaaacatgataataCTTAAATCAAGGGAAAGTGAACAAAAAAGCTTGTCCTGTCCGATAGGCTCATTTCAAGAGCCTACGCTTCTCACAGGGCCTGGTTACTGCTAAACCTCCCCAGTTGCACCAGTTGCGGGCAAGAAACGTCTCCGTGCCACTGCCTGCCCGAGAGCAGCCTGGGGGGACAGCTCGACAGTCAGACTGAAACCTGTCTCTGTGAAACAGGTGAGCCTGAGGAGATAACAGGTGCGGAAGAGGATCAGAAACGGATGCATGTCCTAAAGCACGGAAACTGCTGCAAATCAGACCTGACTGATAaggtgatttttatttatacataaaaaaaaatggctttTGTGTAAATTGTCAGTCACCCTCGATAAGGGCATGTGccaagacataaataataaaagcatgttACACTTTCTTATTACTTCATACCACTTGTGTATCAAATGGATATTGTAGTTGCTGTTATTCTCCTTGTtattatatgaatacaaatataatataattaacaaaGTACAGGGACAAAACGGGATTTTACAACCGCACTGAAAAGCAACGGAGGACACACCTCGATAAAGACGAAGTGCACAGATTGTAACGATTTGGGCGTGGGTTCAGAGCAGATCTGCGCATGTGCTGCAGGTTGCTGGCGTCACAAAGCAACACTGTGCAGGCCCGCACTGCTGCCAGGAGACAACAGATGAAAGGGTGTCCGGCCCTCTTTGAATTCCCTGCACACGATTGTGTCAGCCTGCTTTCACAGCAGTCCCTTAACCACACAGTGCGTCACATAACCCAGCGCTACACAGCAGCCTATATAGAACAGACCTATTCCAGAACCGGGCTGCTGCATTCAGAAACGGGTCCTATTGCAGCTTTCATCGCTCTTGTCGTGTATCAGTCATAACAGCAGAGGATTAAATATTACACCTCACAGTGTAAAATGAACAGACACGTCATCCAACATcgattttgtcatttaaaacttTCACAGTCGCTTTCTCAGACTTCTCGCTTCGACGTCCCCCGCCCCCCTTCAGATAaaaccaacccccccccctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgacacaagCCCCCTCTCACACTCAGACCGCACTTCCTCGCTCAATGCGCTGACAACTCAGAGACCTGCGGGAGCGTGGCCGCCCTTGCTGGGCAGTCTGTCGTGCGGCGGGGATGACATTCCACCAGCTCCTTCACCTGACAAATATatactgcaaagaaaataatgggTAAAATGATACTAAAAACCAAAATAACTCTACATTAACAGTATTAACGAAATAAAAACCACTAGTGTTAGCACAGCGCTTCTGTTTATGAAGATAACAGCAAACTGCTTCCGTATCCACTGGGCTCTCAGAATCAAAACAAAGCCATGTGACCCGGCTGGGCGGAGTCTGCGGGTCACCCGGGTCCTCGTCTTCTTCGTCGTGTTTGGGAACAACGTGCGGCGCTCCTTGCCCTGTACACGCACACTAGTGAGGATTCAGTCATATTCCCAGAGAGACCCAGCCACACCATGGCACCCCCAAGAAAAACCGCACCATCCCTCAGACACACCGCACGTCCATGGAATGGACTGTTCCACGCCTGCCACGTGACCCGCAGTCCAGACGCGTGGCCCGCGCGGGAGCAGCGCGAGACAggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttgaatcaagtccccacgtactGTAGTCTCCTGTTCCAGCGTGAACAGAGCAGTTGAGTGTGGGGCTAGATGGTTAAATCAGTTTTACAAGCAGTGTACTGCATcaatttgattgattttctttctaaatgcaG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18364 lncRNA upstream 41394 26527319 ~ 26548212 (+) True AMCG00016638
TU18352 lncRNA upstream 90364 26495422 ~ 26499242 (+) True AMCG00016640
TU18354 lncRNA upstream 143844 26442152 ~ 26445762 (+) True G14781
TU18340 lncRNA upstream 191679 26397649 ~ 26397927 (+) True G14768
TU18322 lncRNA upstream 207186 26380051 ~ 26382420 (+) True G14755
TU18381 lncRNA downstream 29850 26626707 ~ 26633192 (+) True G14793
TU18388 lncRNA downstream 108140 26704997 ~ 26705204 (+) True G14800
TU18390 lncRNA downstream 115374 26712231 ~ 26713129 (+) True G14802
TU18391 lncRNA downstream 118712 26715569 ~ 26715801 (+) True G14803
TU18559 lncRNA downstream 369440 26966297 ~ 26993948 (+) True AMCG00016663
AMCG00016646 mRNA upstream 5940 26583454 ~ 26583666 (+) True AMCG00016646
AMCG00016637 mRNA upstream 17249 26559807 ~ 26572357 (+) True AMCG00016637
AMCG00016638 mRNA upstream 41467 26529550 ~ 26548139 (+) False AMCG00016638
AMCG00016639 mRNA upstream 67999 26517843 ~ 26521607 (+) True AMCG00016639
AMCG00016641 mRNA upstream 75319 26509041 ~ 26514287 (+) True AMCG00016641
AMCG00016635 mRNA downstream 3236 26600093 ~ 26611394 (+) True AMCG00016635
AMCG00016636 mRNA downstream 68588 26665445 ~ 26667680 (+) True AMCG00016636
AMCG00016647 mRNA downstream 86785 26683642 ~ 26700201 (+) True AMCG00016647
AMCG00016650 mRNA downstream 260861 26857718 ~ 26869181 (+) True AMCG00016650
AMCG00016654 mRNA downstream 296422 26893279 ~ 26897534 (+) True AMCG00016654
TU18348 other upstream 157250 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other upstream 160279 26428723 ~ 26429327 (+) False AMCG00016633
TU18257 other upstream 300384 26285863 ~ 26289222 (+) False AMCG00016625
TU18062 other upstream 639430 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other upstream 639430 25940528 ~ 25950176 (+) False AMCG00016607
TU18379 other downstream 8669 26605526 ~ 26657425 (+) False AMCG00016635
TU18699 other downstream 949137 27545994 ~ 27547609 (+) False AMCG00016683
TU18716 other downstream 991622 27588479 ~ 27599592 (+) False AMCG00016691
TU18717 other downstream 991622 27588479 ~ 27598648 (+) False AMCG00016691
TU18724 other downstream 1016248 27613105 ~ 27619919 (+) False AMCG00016690

Expression Profile