RNA id: TU18352


Basic Information

Item Value
RNA id TU18352
length 2768
lncRNA type sense_over
GC content 0.43
exon number 2
gene id AMCG00016640
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26489938 ~ 26499242 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cccgggctctgaatgacgacgggtgacacagaaactgtaaatcggatgtgtttgagaatgaaacacactggtagccaagagaataagctttcaaacgatgtgcgcattgtaggaatacagtgtgacttctatgcacaggagctgtgtgtaacactgacaaataatgcttaagaggattacattatttttaagtttttggtaatctaaacttttttttaacctctgacAGTTTACAGCTTACCTTTGTagcatttcagGTTATTCattggacttgaactgcttacatttcaataaaaactggaaacttttgaccggtagtgtacatttgtatcaatgtatatatgtatgttgaCATGTTTGTATGTACGTAGttctgtatgtttgtatgtacatAGTTATTTAGTTggcatgtatgtttgtatgttggCATGAATCTTTGTGTGTACGTagttatgtatgtttgtatatacgTGTTATGTATGCCCCTGTAAGTAAGTGAATTCCTGCTGCCTGTGCTGTAGAGAGTCTGCTGTCCACGCGGAAGGTGAAGATGATCGtggaggaggtggtgggggggaaggTGGTGTCCTCTCGGGTGCAGGAGGTGAATCCGAGGTTCTGACACCTCCCCACGAACAGCCACACAACACCCTGCCCACTGGGTCTGCTGGTGCCAGGAGAAGAGCAGCAGTCAGCACGGCCCGCAAGCCTCCCCTTCAGTCATCAGTTAATAGAAACCTCCATCCCTTCATTAGGGTCACTCTCACTGGCAGGAGTCGCAGCACATCCACTTTTAAACATACAGAGTTGATAGAGATTTAGGAAACAGAAGTGACTGTGCTGCACTGTAGCCGATCACTCTGTGTTGTGAAGGATTTGGACATTTGATTTAAGGAGTGGCCTACAGTTCTCACTGGggtggggctctccaggaccagggctggagagcacagatactcactcacacacatccaCACTCTCAcgctcactctcacacacactcctacTCTCTCTCACAAAACAGGTTGCTGTAAAACTGTGGCCCACAGGCACATGGCAGATACAATGACTCTGCTGTAGGATATTCTTTGTGTGAAGCGAAGTGATCGAATCTGTAGGTCAATGAATCTTTGATCCGGTTTCACTCCTCACATCCTGACCCAGACCACACTCCCCTCACTCACTGCAGTATCCCTCAGACCCAGCAGTTTGCATGTGCAGCTCTCTGTAAACCACCACCGGCACTAGACCTGGGGAAGGGGCTCAGGGGGTTCAGGGGGGGCAATACACAATTCAGGTAGCTACTCGAGGGCTCAGGGTGGATCAGGCACAAGCTTGCTCTGCCTTCGAGGACCGCGTCTAAACTGATGTCCCAAATGAGACAGAAATCCACGTTGCGGGACAACTTCGTCTGGCCGTGCGATGTAaagcaggatttgtttttactgaGTGTAACTGAAACACTAAAGCCTCAATGAAGTCTCAACAACAGACTGACAATAAAAGATCCTGAAACCAGCTCTGTGACTCCACTTCCTCTTTTAGTTTTCCCCTGAcctcaatttaattttttctgtacTGAGAAATCCCATCATACCTGGCTCAAAAGTGCAGACATGCAATAGACATATCGTGAATGTGCCAACGAGCTGCTGCAGGGGCGGTGTGGGGTAGAGGAGGGAtacaaagcaatgaatgctgggaagtGCTCTGTGTAGTGGGAAAATAATGGCTTGAAGTAAGTGTTTACCCTGCGTTGTATGGGATGAGAGTGCAGTCTCCAGCCCATATGGTCTGGTGTGTGTTCCTGTGTATACTGTACTTTACCATATCTTTACCATGCTACACTTCACTgcactttaatgtattttctccattattttccatgtttttactatgttttactatattttaaatgttaacatattTTGACACTGATTTtactacatttttattatatttcatatttctaccatgtttttaacctttttttttacaccacTATAGATTACCATggtacagcacactgcactcTACATATTTTAACCATATTTCTTACCATGGTAAACTATACCATGTGTTTACTGTGCTACACCATACTACTACTATGCCTTACTGTATGtcaggggataaaattaacttttttggccactagccactgtgtctggtagaaggaaaaacttaccagccacttggtatttttaccagccaaaggcaaacatcaccagaaatacatgagggtgcgtaaatgtgtcgtgaacatgttaaaacgtgacatttattcaggtaattaatcaatcacaataacaaaagctaatcgCTCACCTGTATAGACTCTTAGACAGGTGcgtatgagggaaaaggatctggatagaaaaacaagctcccacacagtttctacttgtaagtgttataaggtctttaaCCAAAACATCGCATCCTATTGAATTttaacacttgctagtagagactGTGTGCTGGAGCatagttttcaaattaatcaatgacACATTAAAtgacatggcagctaatggggatctgtacaaacacactaaactaacacatgagaaggggtgttatatgatGACACACTGtcgctcttcatactcctcttcctcttcagtgctactcccttctctggatTTCCGCgtgtcattaaaagtaattacatttcaaagtattttggTATGGCccttaaaagtcattaaaagtaattgtttataagctacaatgtaaaagtctgtttctctctctcatctgcactCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18354 lncRNA upstream 49660 26442152 ~ 26445762 (+) True G14781
TU18340 lncRNA upstream 97495 26397649 ~ 26397927 (+) True G14768
TU18322 lncRNA upstream 113002 26380051 ~ 26382420 (+) True G14755
TU18260 lncRNA upstream 191080 26234326 ~ 26304342 (+) True G14703
TU18261 lncRNA upstream 254178 26239170 ~ 26241244 (+) True G14704
TU18364 lncRNA downstream 28077 26527319 ~ 26548212 (+) True AMCG00016638
TU18375 lncRNA downstream 90364 26589606 ~ 26596857 (+) True G14791
TU18377 lncRNA downstream 90364 26589606 ~ 26657318 (+) False G14791
TU18381 lncRNA downstream 127465 26626707 ~ 26633192 (+) True G14793
TU18388 lncRNA downstream 205755 26704997 ~ 26705204 (+) True G14800
AMCG00016632 mRNA upstream 27420 26462323 ~ 26468002 (+) True AMCG00016632
AMCG00016633 mRNA upstream 61766 26429211 ~ 26433656 (+) False AMCG00016633
AMCG00016631 mRNA upstream 78445 26411485 ~ 26416977 (+) True AMCG00016631
AMCG00016626 mRNA upstream 124282 26355605 ~ 26371140 (+) True AMCG00016626
AMCG00016625 mRNA upstream 192908 26285802 ~ 26302514 (+) True AMCG00016625
AMCG00016641 mRNA downstream 9799 26509041 ~ 26514287 (+) True AMCG00016641
AMCG00016639 mRNA downstream 18601 26517843 ~ 26521607 (+) True AMCG00016639
AMCG00016638 mRNA downstream 30308 26529550 ~ 26548139 (+) False AMCG00016638
AMCG00016637 mRNA downstream 60565 26559807 ~ 26572357 (+) True AMCG00016637
AMCG00016646 mRNA downstream 84212 26583454 ~ 26583666 (+) True AMCG00016646
TU18348 other upstream 63066 26427339 ~ 26432356 (+) True AMCG00016633
TU18353 other upstream 66095 26428723 ~ 26429327 (+) False AMCG00016633
TU18257 other upstream 206200 26285863 ~ 26289222 (+) False AMCG00016625
TU18062 other upstream 545246 25940528 ~ 25950176 (+) True AMCG00016607
TU18064 other upstream 545246 25940528 ~ 25950176 (+) False AMCG00016607
TU18379 other downstream 106284 26605526 ~ 26657425 (+) False AMCG00016635
TU18699 other downstream 1046752 27545994 ~ 27547609 (+) False AMCG00016683
TU18716 other downstream 1089237 27588479 ~ 27599592 (+) False AMCG00016691
TU18717 other downstream 1089237 27588479 ~ 27598648 (+) False AMCG00016691
TU18724 other downstream 1113863 27613105 ~ 27619919 (+) False AMCG00016690

Expression Profile