RNA id: AMCG00016857


Basic Information

Item Value
RNA id AMCG00016857
length 582
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00016857
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32545619 ~ 32546814 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGGTCTCAAGGACCTGCTGTGTCCGGCCAGGTTCTGGTTGCTCATCCTCTGCCATCTGTTTCTTCCTCAGACCCGCAAGCTGACCAAGGTGGAGAGGCAGCGCTTCAGCGAGGAGGTGGAGATGCTGAAGGGGCTGCAGCACCCTAACATCGTACGCTTCTACGACTCCTGGAAGTCCACAGTCAAGGGCCACAAGTGCATCATCCTGGTCACGGAGCTCATGACCTCAGGGACGCTCAAGACCTACCTGAAGAGGTTCAAGGAGATGAAGCTGAAGCTGCTACAATGCTGGAGCCGGCAGATCCTGAAGGGGCTGCACTTCCTGCACACGCGCACCCCCCCCATCATCCACCGCGACCTCAAGTGTGACAACATCTTCATCACCGGCCCCACCGGCTCCGTGAAGATTGGCGACCTCGGGCTGGCCACGCTAAAGAGTGCCTCCTTTGCAAAGAGCGTCATAGGCACCCCTGAGTTCATGGCCCCAGAGATGTACGAGGAGAAGTACGATGAAGCTGTAGACGTCTACGCCTTCGGGATGTGCATCCTGGAAATGACCACGTCGGAATACCCCTACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20187 lncRNA downstream 108936 32434236 ~ 32436683 (-) True G16250
TU20186 lncRNA downstream 117539 32427852 ~ 32428080 (-) True G16249
TU20185 lncRNA downstream 119663 32425716 ~ 32425956 (-) True G16248
TU20182 lncRNA downstream 129175 32416191 ~ 32416444 (-) True G16245
TU20181 lncRNA downstream 152239 32393142 ~ 32393380 (-) True G16244
TU20246 lncRNA upstream 307967 32854781 ~ 32857465 (-) True G16292
TU20247 lncRNA upstream 312427 32859241 ~ 32861597 (-) True G16293
TU20285 lncRNA upstream 437440 32984254 ~ 32984464 (-) True G16325
TU20354 lncRNA upstream 708839 33255653 ~ 33256382 (-) True G16375
TU20356 lncRNA upstream 737200 33284014 ~ 33284227 (-) True G16377
AMCG00016858 mRNA downstream 11860 32508349 ~ 32533759 (-) True AMCG00016858
AMCG00016859 mRNA downstream 38300 32502565 ~ 32507319 (-) False AMCG00016859
AMCG00016860 mRNA downstream 75512 32469895 ~ 32470107 (-) True AMCG00016860
AMCG00016856 mRNA downstream 75993 32438236 ~ 32469626 (-) True AMCG00016856
AMCG00016850 mRNA downstream 162424 32382683 ~ 32383195 (-) True AMCG00016850
AMCG00016862 mRNA upstream 37205 32584019 ~ 32590534 (-) True AMCG00016862
AMCG00016864 mRNA upstream 127503 32674317 ~ 32692351 (-) True AMCG00016864
AMCG00016867 mRNA upstream 316432 32863246 ~ 32871525 (-) True AMCG00016867
AMCG00016868 mRNA upstream 374191 32921005 ~ 32922249 (-) True AMCG00016868
AMCG00016871 mRNA upstream 375615 32922429 ~ 32924404 (-) True AMCG00016871
TU20188 other downstream 42367 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other downstream 46724 32497507 ~ 32498895 (-) False AMCG00016859
TU20184 other downstream 122181 32423058 ~ 32423438 (-) True G16247
TU19613 other downstream 2016119 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 2343268 30201459 ~ 30202351 (-) True G15706
TU20326 other upstream 629262 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 879674 33426488 ~ 33431085 (-) False AMCG00016889
TU20442 other upstream 941911 33488725 ~ 33513579 (-) False AMCG00016891
TU20574 other upstream 1559876 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 5211343 37758157 ~ 37758471 (-) True G17032

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000050_00678001_00716978.mRNA True 4704 mRNA 0.54 19 CI01000050 677899 ~ 716978 (+)