RNA id: AMCG00016867


Basic Information

Item Value
RNA id AMCG00016867
length 792
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00016867
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32863246 ~ 32871525 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAACTGCCCAGAGCCTCGGAGGGACCATGGCTGACAGTCCACTGGAACCCTCCAGCCCAACTCGCCTGCCCTGGCTGGTGGGAGGCTCTCAGGTGGTggggctggcctgtgtggtgaTCACTGGGGTGTGGATGGGTCACTACAGGGGGGGCTACGCCTGGGACGGCTCCAGCAAGCAGTTCAACGTCCACCCACTGTGTATGGTCATCGGGCTGGTGTTCCTGTACGGAGATGccaTCCTGGTGTATCGTGTCTTCAGGAATGAGTCAAAGCGTGTGGCCAAAATACTGCATGGCATCATCCACCTCATCTCCCTGATTATCAGTATTGTCGGTTTCGTCTCTGTGTTTGGATTCCATGCAAAAGCCAACATCCCAGATATGTACTCTCTGCACAGCTGGTGTGGAATGCTTACTTTCGTTGTGTTTTGTATACAGTGGCTGATGGGCCTGACCATCTTCCTGTTCCCTGGGGCGTCGCCGGCCCTGCGCAGCTGGTACCTGTCCCTGCACGTCTTTTTCGGCTTGGCGCTGTTCATCCTGGCCATCGCCACCTGCCTGCTGGGCATCAAGGAGAAGCTGCTTTTCAGCATCATGGCGACCTATTCCAAGTTTGTCCCAGAGGGAGTCCTGGCCAACGTGTTGGGATTGTTACTGCTCGTGTTCGGGGGGCTGGTAGGCTACATCTTGACGAGGGACGAGTTTAAACGCCCCCCGCACCCGGAGGAGGAAGCCCTGTCCATGCACTTCAAGACCCTGACTGAGGGAGAGAGCCCCAACAGCCCGTAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08360 CYB561; transmembrane ascorbate-dependent reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20247 lncRNA downstream 1649 32859241 ~ 32861597 (-) True G16293
TU20246 lncRNA downstream 5781 32854781 ~ 32857465 (-) True G16292
TU20187 lncRNA downstream 426563 32434236 ~ 32436683 (-) True G16250
TU20186 lncRNA downstream 435166 32427852 ~ 32428080 (-) True G16249
TU20185 lncRNA downstream 437290 32425716 ~ 32425956 (-) True G16248
TU20285 lncRNA upstream 112729 32984254 ~ 32984464 (-) True G16325
TU20354 lncRNA upstream 384128 33255653 ~ 33256382 (-) True G16375
TU20356 lncRNA upstream 412489 33284014 ~ 33284227 (-) True G16377
TU20357 lncRNA upstream 420506 33292031 ~ 33292249 (-) True G16378
TU20405 lncRNA upstream 453561 33325086 ~ 33328341 (-) True G16422
AMCG00016864 mRNA downstream 170895 32674317 ~ 32692351 (-) True AMCG00016864
AMCG00016862 mRNA downstream 272712 32584019 ~ 32590534 (-) True AMCG00016862
AMCG00016857 mRNA downstream 316432 32545619 ~ 32546814 (-) True AMCG00016857
AMCG00016858 mRNA downstream 329487 32508349 ~ 32533759 (-) True AMCG00016858
AMCG00016859 mRNA downstream 355927 32502565 ~ 32507319 (-) False AMCG00016859
AMCG00016868 mRNA upstream 49480 32921005 ~ 32922249 (-) True AMCG00016868
AMCG00016871 mRNA upstream 50904 32922429 ~ 32924404 (-) True AMCG00016871
AMCG00016870 mRNA upstream 55506 32927031 ~ 32930813 (-) True AMCG00016870
AMCG00016869 mRNA upstream 60168 32931693 ~ 32934506 (-) True AMCG00016869
AMCG00016876 mRNA upstream 269913 33141438 ~ 33148429 (-) True AMCG00016876
TU20188 other downstream 359994 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other downstream 364351 32497507 ~ 32498895 (-) False AMCG00016859
TU20184 other downstream 439808 32423058 ~ 32423438 (-) True G16247
TU19613 other downstream 2333746 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 2660895 30201459 ~ 30202351 (-) True G15706
TU20326 other upstream 304551 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 554963 33426488 ~ 33431085 (-) False AMCG00016889
TU20442 other upstream 617200 33488725 ~ 33513579 (-) False AMCG00016891
TU20574 other upstream 1235165 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 4886632 37758157 ~ 37758471 (-) True G17032

Expression Profile