RNA id: AMCG00016994


Basic Information

Item Value
RNA id AMCG00016994
length 2942
RNA type mRNA
GC content 0.45
exon number 4
gene id AMCG00016994
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41433692 ~ 41446610 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGCCGGCAGAGGGCTGTGCAAAGAGAAAGTGGATTCCAGTAAAGTCTCCACCAAAGGAGGAGATTCAACCTTGGCCAAGCCGGACCCTCTCCCCCAGTCGGTGACCCTCTTTGTGAACGAGGAAGGCTGTCCCATGCATTTCTACCTGCGCCCCGGCAGCACCAAGAGCCGCTTCCTGGCCCTGATCGAGGGGGGCGGAGGGGTGATGTGCCGTGTGCAGGAGCCGGGGGCCATTCTGCTGGCAGACCCCAAGGAGCTGACGGGAGGGGCTGCCCAGGGGTACATCTCCACCCAGTATGTCCTGGACTGCTTGGAGAGAAACAAGCAGCTGGACTTGGACTCGTACAGGCTCGACTCGGTCCAGTCGGAGGCAGGGAAGGATCCCCCTGCCAGGAAAAAGGAGAGAAGCTTGACAGGGCGGATGTTGTACACCAAAGAGGAGGACGCCGCTATCCTGCGTTATGTGAGGcggcgccggaatgaggtcaaagGCAACAGCATCTGGCAAGCCATGGCACGTGAGGGCATCACTGGGCACAGCTGGCAGTCCATGAAGGACCGCTACCGCAAGCAGCTGGTGGAccagcaacagcagcaggaggaggaggaggaggaggaggaaccGGTGGAGAGACGGGCTACaagacaatttatttttgaaagcaggaCTCTGGAAAAGAGCCCTGAAGTAGCAAAGGTGCCAGAGGTCTCCCAGGGGCCTCCAGCTGACAGTGACCTAGTACGGGACCctggggaggaggaagagcagcaggaggacgaggaggaagagaaaggtGAGGAAGAGCATGTCAGGCCAGTGGCTGCAGTGGAGAAGACACTCAGGGAAATAGAGAACCGTCTGGAGCAACAGAATCAGCCGGTGAATAAACCACAGCTCAAGAGGAAGCAGAGGGAGGAGGGACCTTCAGAGGTGATACCAGTTCACTCCACTCCCAAACAgaatccattttcttttctatggGCAGCAATTAGAGAATTTGAGTCCGATGATGAAACTCCAGACCTAGTTGAAACCGAGAAACCACCAGGCTGTCCCAGCATTCCTGAAAGTGGGTTCCCGGTCCCCAGCCAGGAGCAGGGGGTCCAGGACACGGACAGACCCAGCCAGCCCCAGCCTCGGCCTCCGAGGACCAGCCTGCGAGAGTTTGTCATGAACATGGACTCGCAGCCCCAGCTGGGAGAGATGTCCATAGCCCCTGATCATGAGGAGCCCCCTGAGGCCGAGGTGGAGGAAGCCAAGGAGGCCATGTCATTCCTGATGGAGGAGTCTGGCATGGATCTGGTTCGGGTGATGCAGGCTCTTCTGAAGAACAATGGAGACTTTCAGGCAGCCCGTTCCTACCTGCTCTCTGGCCACCGGGCTGACGTCTGCCCCCTCTGGACCCATCAGGATGACTGCCTCCTGTTGTCAGGAAACCCCTCAGCCCAGCAAACCCTCATTGAGAAATATGGGCAGGAAGCTGTGGCTGTAAGACTTGCTTTCCTCTCGGACTCTGCCTGTTAAAGTTACTGGATGTTCAGTGGGGAATTTTATTTGTGCTCATTGCTGGTCGTGTTCAGAAGGACAAGGTTTGTTTTGAAATTCTCCGTTTCAGAATATCAGTTCCAGCGTGCTTTGGAACATGTTTGGCTGTACTCTTAAGGGAATCCAGGTTTCACTTTGAGATCCATTTATTTACCAAAACTGAACTAAAGCGGATCACTCGGATAGTCGTGTTCCATCAAGATTTGGATATGATCAGTTATGCTTACAACTTACAAAATCAGGTCTATTTTGGTTAGAATCAATATTTTAAgcagttaataaaaataaaagagttCCTGAATACCTACACATGCCCAGTCCTGGGGATCCCTCAATGTTCAACCATGGTGATTCACCCAGtaatgatttaatataaaagCTATACATGTTAACATAGTCtatacaaagtaaaacaaaattgaataagtaattatatatatttttcaattaaagctagtatagatttgtatatatatgtgtgtgtatacagtgtatgcatgtgtataacATTGGGTTATAAACATTACTACTGGAGATATTGGAAACTTTGATATTCCCTTGATTCTTTTATGTAATTGCCTTCTATTTTATACATACTTAGtccaagaaatataattgcatttctgcAAGGGTTAGGTTGCATATAAAGCCATAGGTTTTGCTGTTCCTGTACAACAAGCAGTGGACAAAAATATGAGAGACATTCCAAGGGTCTGTTGTCTTGAAGCTGTACTCTGAATACCTTTATGTAAATTTGACTATTTCTAGAAGTCTGTTGTGTAAGTAGTTTCTTGTAACCTCTACCAGACACAATTTTTATAGTCAACTGTACTGATGGGTATTCCTGGGTATGGGTTCTTTTGAGAATCTTATTTTCTCAGGTAATTCCAGTATATCACACGGACAGCATTCTCAATAATCAATGGCTTATAGtagtttgtatgttttacatttctgattttccacatttcaatATACTGTGTAactatcaaaatgttttttcaacatGTAGCCTATTTAATGTGTACTACTTCTTTTGACTCACATAATGCATTGTTGATTTGATTAagcatatttgtattgatgtttaatgtTAATAGGTATTTTGGTATCCTTATTCTATATTACTTTTtgattgcttaaaaataaatgttggttgcatttataaaatataatttgcatacTGTTCACTTGTGATGAACCTAAAATAACTTTACCTTTGAGTCTGGAATTGGAAAATTTACTAACTGCAACATTGACATGATATTAAAAGCTTTTGATTgggtgaaaatatgtattttattaatttaatgtttctaAAAGTAGGATTGATTGTAAGAAAAACTGCAAATACttcaaaattttaaaataaggacattaaatacttaaaatgc

Function

GO: NA

KEGG:

id description
K11113 TERF2IP, RAP1; telomeric repeat-binding factor 2-interacting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21622 lncRNA upstream 188173 41245302 ~ 41245519 (+) True G17424
TU21617 lncRNA upstream 216883 41216495 ~ 41216809 (+) True G17419
TU21569 lncRNA upstream 1148920 40268425 ~ 40284772 (+) False G17381
TU21571 lncRNA upstream 1148920 40268425 ~ 40284772 (+) True G17381
TU21543 lncRNA upstream 1643125 39790089 ~ 39790567 (+) True G17361
TU21691 lncRNA downstream 155338 41601948 ~ 41605391 (+) True G17482
TU21710 lncRNA downstream 224768 41671378 ~ 41673353 (+) True G17491
TU21717 lncRNA downstream 241400 41688010 ~ 41690199 (+) True G17498
TU21735 lncRNA downstream 267200 41713810 ~ 41716989 (+) True G17514
TU21741 lncRNA downstream 295740 41742350 ~ 41742773 (+) True G17518
AMCG00016995 mRNA upstream 7632 41402757 ~ 41426060 (+) True AMCG00016995
AMCG00016989 mRNA upstream 972803 40443930 ~ 40460889 (+) True AMCG00016989
AMCG00016988 mRNA upstream 1153305 40265941 ~ 40280387 (+) True AMCG00016988
AMCG00016986 mRNA upstream 1633041 39798135 ~ 39800651 (+) True AMCG00016986
AMCG00016985 mRNA upstream 1636129 39790933 ~ 39797563 (+) True AMCG00016985
AMCG00016998 mRNA downstream 3645 41450255 ~ 41457202 (+) True AMCG00016998
AMCG00016997 mRNA downstream 11762 41458372 ~ 41464821 (+) True AMCG00016997
AMCG00016996 mRNA downstream 29956 41476566 ~ 41496271 (+) True AMCG00016996
AMCG00017000 mRNA downstream 211979 41658589 ~ 41670377 (+) True AMCG00017000
AMCG00017011 mRNA downstream 496939 41943549 ~ 41952515 (+) True AMCG00017011
TU21320 other upstream 2930060 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 7332829 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 7385972 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 7761072 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 8576252 32856361 ~ 32857440 (+) True G16289
TU21955 other downstream 944687 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 2679604 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 3208042 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 7956109 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 8266914 49713524 ~ 49721471 (+) False AMCG00017183

Expression Profile