RNA id: TU13241


Basic Information

Item Value
RNA id TU13241
length 242
lncRNA type sense_over
GC content 0.50
exon number 2
gene id G10673
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3869724 ~ 3912272 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacattttgtccttaaagttgatgtgttagaagcaggaaaaatgagcaagcataaggatctgggcgactttgacaagggccagattgtgatggctagatgactgggtcagagcatctccaaaactgcagctcttgtgggatgttcccggactgcagtggtcagtacctatcaaaagtggtccaaggaaggaatagcggtgaaccggcgacggGGACATGAGTTGGCCAAGGCTccttgatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13179 lncRNA downstream 127462 3741593 ~ 3742262 (-) True G10624
TU13140 lncRNA downstream 322633 3490758 ~ 3547091 (-) True G10592
TU13146 lncRNA downstream 347689 3514439 ~ 3522035 (-) True G10596
TU13145 lncRNA downstream 347689 3516013 ~ 3522035 (-) False G10596
TU13101 lncRNA downstream 491139 3378378 ~ 3378585 (-) True G10556
TU13262 lncRNA upstream 59614 3971886 ~ 3973511 (-) True G10692
TU13266 lncRNA upstream 65287 3977559 ~ 3979117 (-) True G10696
TU13268 lncRNA upstream 75381 3987653 ~ 3987955 (-) True G10698
TU13286 lncRNA upstream 254506 4166778 ~ 4170338 (-) True G10715
TU13308 lncRNA upstream 442581 4354853 ~ 4355296 (-) True G10735
AMCG00016050 mRNA downstream 34369 3823251 ~ 3835355 (-) True AMCG00016050
AMCG00016045 mRNA downstream 85228 3783534 ~ 3784496 (-) True AMCG00016045
AMCG00016047 mRNA downstream 201166 3622918 ~ 3668558 (-) True AMCG00016047
AMCG00016046 mRNA downstream 327188 3528842 ~ 3542536 (-) True AMCG00016046
AMCG00016042 mRNA downstream 366873 3497702 ~ 3502851 (-) True AMCG00016042
AMCG00016048 mRNA upstream 16462 3928734 ~ 3947435 (-) True AMCG00016048
AMCG00016053 mRNA upstream 192459 4104731 ~ 4105731 (-) True AMCG00016053
AMCG00016058 mRNA upstream 464173 4376445 ~ 4378160 (-) True AMCG00016058
AMCG00016059 mRNA upstream 512716 4424988 ~ 4427749 (-) True AMCG00016059
AMCG00016063 mRNA upstream 531144 4443416 ~ 4451855 (-) True AMCG00016063
TU13149 other downstream 330531 3529252 ~ 3539193 (-) False AMCG00016046
TU13017 other downstream 834541 3034422 ~ 3035183 (-) True G10478
TU12954 other downstream 1159039 2710399 ~ 2710685 (-) True G10420
TU14024 other upstream 4279274 8191546 ~ 8194432 (-) False G11326
TU14520 other upstream 6934562 10846834 ~ 10847811 (-) True AMCG00016176
TU14519 other upstream 6934659 10846931 ~ 10847811 (-) False AMCG00016176
TU14856 other upstream 8410889 12323161 ~ 12329033 (-) True AMCG00016211
TU15028 other upstream 8949827 12862099 ~ 12870560 (-) False AMCG00016226

Expression Profile